##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545378_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2284551 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.206305746730976 31.0 31.0 33.0 30.0 34.0 2 31.569914613418568 31.0 31.0 34.0 30.0 34.0 3 31.74957311086511 31.0 31.0 34.0 30.0 34.0 4 35.53737867966178 37.0 35.0 37.0 33.0 37.0 5 35.440595110373984 37.0 35.0 37.0 33.0 37.0 6 35.49240222695838 37.0 35.0 37.0 33.0 37.0 7 35.84390762123498 37.0 35.0 37.0 35.0 37.0 8 35.886225783534705 37.0 35.0 37.0 35.0 37.0 9 37.76741469111436 39.0 37.0 39.0 35.0 39.0 10 37.153792145590096 39.0 37.0 39.0 33.0 39.0 11 36.74515867669402 39.0 35.0 39.0 32.0 39.0 12 35.87994183539785 37.0 35.0 39.0 31.0 39.0 13 35.48929658388016 37.0 35.0 39.0 30.0 39.0 14 36.42528488092409 38.0 35.0 41.0 31.0 41.0 15 36.71525476997449 38.0 35.0 41.0 31.0 41.0 16 36.86751488585722 38.0 35.0 41.0 32.0 41.0 17 36.79148856821318 38.0 35.0 41.0 32.0 41.0 18 36.72306505742266 38.0 35.0 40.0 31.0 41.0 19 36.67771303857957 38.0 35.0 40.0 31.0 41.0 20 36.54470615889074 38.0 35.0 40.0 31.0 41.0 21 36.40875909533208 38.0 35.0 40.0 31.0 41.0 22 36.27033364542967 38.0 35.0 40.0 31.0 41.0 23 36.20640423435502 38.0 35.0 40.0 31.0 41.0 24 36.08373461568597 37.0 35.0 40.0 30.0 41.0 25 35.95289271283504 37.0 34.0 40.0 30.0 41.0 26 35.7795553699611 37.0 34.0 40.0 30.0 41.0 27 35.649657635132684 37.0 34.0 40.0 30.0 41.0 28 35.58067340146926 37.0 34.0 40.0 29.0 41.0 29 35.7294650020945 37.0 34.0 40.0 30.0 41.0 30 35.72141002761593 37.0 34.0 40.0 30.0 41.0 31 35.59600245299842 37.0 34.0 40.0 30.0 41.0 32 35.45250729793294 37.0 34.0 40.0 29.0 41.0 33 35.294028892329386 36.0 34.0 40.0 29.0 41.0 34 35.132062273943546 36.0 34.0 40.0 27.0 41.0 35 34.99885841900662 36.0 34.0 40.0 27.0 41.0 36 34.826175471679115 36.0 34.0 40.0 26.0 41.0 37 34.7029066105331 36.0 33.0 40.0 26.0 41.0 38 34.66030743021276 36.0 33.0 40.0 26.0 41.0 39 34.61905380969827 36.0 33.0 40.0 26.0 41.0 40 34.45950911141839 36.0 33.0 40.0 25.0 41.0 41 34.39505487073828 35.0 33.0 40.0 24.0 41.0 42 34.314003057931295 35.0 33.0 40.0 24.0 41.0 43 34.186810449843314 35.0 33.0 40.0 24.0 41.0 44 34.051069991433764 35.0 33.0 40.0 24.0 41.0 45 34.00729640091204 35.0 33.0 40.0 23.0 41.0 46 34.009973513394975 35.0 33.0 40.0 24.0 41.0 47 33.958953860080165 35.0 33.0 39.0 23.0 41.0 48 33.88893441205734 35.0 33.0 39.0 23.0 41.0 49 33.84111101043487 35.0 33.0 39.0 24.0 41.0 50 33.73098565100976 35.0 33.0 39.0 24.0 41.0 51 33.48954258407888 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 5.0 11 4.0 12 5.0 13 12.0 14 27.0 15 81.0 16 213.0 17 580.0 18 1213.0 19 2354.0 20 4189.0 21 6606.0 22 9683.0 23 13908.0 24 19278.0 25 26618.0 26 35095.0 27 42481.0 28 48211.0 29 55592.0 30 66484.0 31 80711.0 32 100545.0 33 130681.0 34 229954.0 35 326671.0 36 168672.0 37 207158.0 38 282377.0 39 424893.0 40 249.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.00887088972844 23.94479265291079 28.299390120859634 13.746946336501134 2 30.32009353260225 26.081974094690818 29.723652481384743 13.874279891322189 3 29.5405092729381 25.585421380393786 30.71329990006789 14.16076944660023 4 27.258704226782417 28.006203407146522 29.20070508384361 15.53438728222745 5 23.89953211812737 32.66541215319772 28.689138478414357 14.745917250260554 6 22.70433008499263 41.36300743559676 25.34861335991186 10.584049119498754 7 88.88525578986855 4.025254853141821 5.281694302293974 1.8077950546956494 8 90.06566279325784 3.042961177054047 5.038057806544918 1.853318223143191 9 85.15935954154668 4.8843295684797585 6.868658217741692 3.087652672231874 10 54.14350566041205 20.703499287168466 12.386635273189349 12.766359779230141 11 45.544222912948754 21.16761674394662 17.98265829915813 15.305502043946491 12 40.13589541227138 20.93273470366825 23.225701680549044 15.705668203511324 13 23.46434813667981 35.99302444988096 23.83903883082496 16.703588582614266 14 18.187381240340006 37.486797186843276 26.598049244687466 17.727772328129245 15 17.149059049239874 22.72039451078133 43.304658114439114 16.82588832553968 16 19.499542798563045 17.628190397150252 41.942552387755846 20.92971441653086 17 19.67257461094106 18.83604261844012 27.702336257759185 33.78904651285964 18 24.127585683138612 22.411143371279522 30.54004922630311 22.921221719278755 19 30.79103946464754 23.337145898690814 23.56393006765881 22.307884569002837 20 32.12543733976611 23.015419660143284 22.725209461290206 22.133933538800406 21 26.3150614715977 25.61531784582616 25.57408436055925 22.49553632201689 22 25.11635765627469 24.930806972573606 23.965015445048063 25.98781992610364 23 24.076372118635128 28.73041573595862 23.40586837413566 23.787343771270592 24 24.081756108749598 23.880053454705106 32.59642704408875 19.441763392456547 25 21.58520426989811 24.238154455733316 31.00876277220338 23.167878502165195 26 21.09044621897257 30.15415282915549 25.184336003004532 23.571064948867416 27 21.976134478941376 28.732516805271587 27.150280295778035 22.14106842000901 28 18.72980730130341 27.565635435584497 34.03005667196749 19.674500591144607 29 19.651345056424656 24.503064278276128 33.5617370765634 22.283853588735816 30 22.212373459817705 26.626457452689827 29.494198203498197 21.66697088399427 31 28.76976701329933 25.158160181147192 23.517049958613313 22.555022846940165 32 30.546396206519354 25.666925360825825 23.956173445022678 19.830504987632143 33 28.15638609074606 25.96864766862285 23.92846559345797 21.94650064717312 34 21.61615126998697 25.67287839054589 28.666727072409415 24.044243267057727 35 23.227058621147002 24.037108385849123 29.17606129169364 23.559771701310236 36 29.563971213599523 24.660075437142794 25.19409722085434 20.58185612840335 37 23.99412400948808 28.750157033045003 27.221147612813194 20.03457134465372 38 23.300596047100722 29.551058391780266 23.83321711793696 23.31512844318205 39 23.087906551440522 29.168401143156796 25.22162998330963 22.52206232209305 40 24.89745249723031 25.347256419313908 24.769637447358363 24.98565363609742 41 20.066787740785827 23.57833114690808 26.177135025657122 30.177746086648977 42 23.516218285343594 26.645060670565023 22.827942996238647 27.010778047852728 43 24.033694148215556 26.391838046075573 24.858101219889598 24.716366585819273 44 22.399105995007336 28.9357952613008 25.404466785814805 23.260631957877063 45 20.55926963328899 30.909093296669678 22.889749451861658 25.641887618179677 46 23.647710206513228 29.433573599363726 25.479492469198544 21.439223724924503 47 24.275448436038417 25.18459863666865 27.21830241478522 23.32165051250771 48 25.087555497776147 22.362249737475768 28.562549052308313 23.987645712439775 49 21.79496102297563 23.210293838920645 29.977619234589202 25.01712590351452 50 20.775592227969522 28.653639161480747 26.782899571950903 23.78786903859883 51 20.448219365643403 30.468481552830294 24.365794416495845 24.71750466503046 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 600.0 1 1859.5 2 3119.0 3 7142.0 4 11165.0 5 8478.5 6 5792.0 7 5936.0 8 6080.0 9 6376.0 10 6672.0 11 6862.5 12 7053.0 13 7040.5 14 7028.0 15 6824.0 16 6620.0 17 6279.0 18 5938.0 19 5715.0 20 5492.0 21 5959.5 22 6427.0 23 6891.0 24 7355.0 25 8419.0 26 11671.5 27 13860.0 28 17911.5 29 21963.0 30 25183.0 31 28403.0 32 31845.0 33 35287.0 34 39545.0 35 43803.0 36 46778.5 37 49754.0 38 60868.0 39 71982.0 40 100344.5 41 128707.0 42 154102.5 43 179498.0 44 181983.5 45 184469.0 46 181321.0 47 178173.0 48 172586.0 49 166999.0 50 164925.0 51 162851.0 52 154033.5 53 145216.0 54 137354.0 55 129492.0 56 124381.0 57 119270.0 58 119253.0 59 119236.0 60 115544.5 61 111853.0 62 101374.0 63 90895.0 64 78434.5 65 65974.0 66 56436.5 67 46899.0 68 40136.0 69 33373.0 70 29542.0 71 25711.0 72 21779.5 73 17848.0 74 14297.0 75 8634.5 76 6523.0 77 4777.5 78 3032.0 79 2509.0 80 1986.0 81 1551.5 82 1117.0 83 822.5 84 528.0 85 335.0 86 142.0 87 113.5 88 85.0 89 59.0 90 33.0 91 22.0 92 11.0 93 8.0 94 5.0 95 3.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2284551.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.6841044467055 #Duplication Level Percentage of deduplicated Percentage of total 1 80.71390480344452 14.273531228455576 2 7.0364440774233 2.488664239971119 3 2.121426775214592 1.125465980067974 4 0.9974440389928186 0.7055561826117119 5 0.5954924770447612 0.5265375580643467 6 0.44024146069942366 0.4671165583667281 7 0.31864466946563347 0.39444619313513485 8 0.27115752855784425 0.38361424452219584 9 0.22014833139080517 0.35038134774746404 >10 3.587550703401891 16.893584813775593 >50 2.4349701357266698 32.19572519052157 >100 1.2555966923121091 28.89799222433302 >500 0.0054829549701707015 0.5856012628999949 >1k 9.969009036674002E-4 0.25187861951331914 >5k 4.984504518337001E-4 0.45990435601425805 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5291 0.23159911947686876 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5144 0.22516459470591815 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04145234665367505 0.0 2 0.0 0.0 0.0 0.14134068357414653 0.0 3 0.0 0.0 0.0 0.20367240652539603 0.0 4 0.0 0.0 0.0 0.31581698110482104 0.0 5 0.0 0.0 0.0 0.5109975658236564 0.0 6 0.0 0.0 0.0 0.7387884971707789 0.0 7 0.0 0.0 0.0 0.8712871807195375 0.0 8 0.0 0.0 0.0 1.2279874688724393 0.0 9 0.0 0.0 0.0 1.3810153504999452 0.0 10 0.0 0.0 0.0 1.6326621730046735 0.0 11 0.0 0.0 0.0 1.9164378470868018 0.0 12 0.0 0.0 0.0 2.1514949764745896 0.0 13 0.0 0.0 0.0 2.2488445213085635 0.0 14 0.0 0.0 0.0 2.286532452109846 0.0 15 0.0 0.0 0.0 2.3473759176310796 0.0 16 0.0 0.0 0.0 2.4873596606072703 0.0 17 0.0 0.0 0.0 2.6428387897665666 0.0 18 0.0 0.0 0.0 2.8370126121062738 0.0 19 0.0 0.0 0.0 2.9358066420929103 0.0 20 0.0 0.0 0.0 3.0460690087461386 0.0 21 0.0 0.0 0.0 3.1919620091650396 0.0 22 0.0 0.0 0.0 3.343545405639883 0.0 23 0.0 0.0 0.0 3.5117622675090203 0.0 24 0.0 0.0 0.0 3.642116109467462 0.0 25 0.0 0.0 0.0 3.750890218690675 0.0 26 0.0 0.0 0.0 3.85287962492411 0.0 27 0.0 0.0 0.0 3.9561384272007936 0.0 28 0.0 0.0 0.0 4.063511823548697 0.0 29 0.0 0.0 0.0 4.178589140710801 0.0 30 0.0 0.0 0.0 4.316778220315502 0.0 31 0.0 0.0 0.0 4.450327438520742 0.0 32 0.0 0.0 0.0 4.582213310186553 0.0 33 0.0 0.0 0.0 4.712348290758228 0.0 34 0.0 0.0 0.0 4.853470112945607 0.0 35 0.0 0.0 0.0 5.018491598567946 0.0 36 0.0 0.0 0.0 5.157512351442362 0.0 37 0.0 0.0 0.0 5.299290757790042 0.0 38 0.0 0.0 0.0 5.441725748298024 0.0 39 0.0 0.0 0.0 5.59077035268637 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATCG 20 7.03475E-4 45.000004 21 ATCGTAC 20 7.03475E-4 45.000004 11 GCGATCG 20 7.03475E-4 45.000004 9 AATCGTA 60 0.0 45.000004 12 CGAACTA 25 3.8920196E-5 45.0 25 CGTACTC 25 3.8920196E-5 45.0 31 CAATACG 70 0.0 45.0 1 TACGTAG 110 0.0 45.0 1 TATTACG 75 0.0 42.000004 1 ACGTATG 75 0.0 39.000004 1 CGTTAGT 35 6.2510007E-6 38.571426 23 TATCGTG 70 0.0 38.571426 1 CACGACC 310 0.0 38.46774 27 TATGGGC 765 0.0 37.941174 4 TATGGGA 1305 0.0 37.931034 4 TGTTGCG 120 0.0 37.500004 1 CACTCGA 30 1.1402749E-4 37.500004 28 CGAATCG 30 1.1402749E-4 37.500004 36 ATTGCGT 60 1.5643309E-10 37.500004 14 TGTACGC 30 1.1402749E-4 37.500004 21 >>END_MODULE