##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545372_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2297784 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.31013620079172 31.0 31.0 33.0 30.0 34.0 2 31.685344662509618 31.0 31.0 34.0 30.0 34.0 3 31.862838282449527 31.0 31.0 34.0 30.0 34.0 4 35.6290978612437 37.0 35.0 37.0 33.0 37.0 5 35.56624904690781 37.0 35.0 37.0 33.0 37.0 6 35.63385461818866 37.0 35.0 37.0 33.0 37.0 7 35.9663114548626 37.0 35.0 37.0 35.0 37.0 8 36.019793853556294 37.0 35.0 37.0 35.0 37.0 9 37.93541473001814 39.0 38.0 39.0 35.0 39.0 10 37.28300745413842 39.0 37.0 39.0 34.0 39.0 11 36.91546681498348 39.0 37.0 39.0 33.0 39.0 12 36.15293561100608 37.0 35.0 39.0 32.0 39.0 13 35.8275695191541 37.0 35.0 39.0 31.0 39.0 14 36.7941642904642 38.0 35.0 41.0 31.0 41.0 15 37.06102662391243 38.0 35.0 41.0 32.0 41.0 16 37.16528490058248 38.0 35.0 41.0 32.0 41.0 17 37.10762108187715 38.0 35.0 41.0 32.0 41.0 18 37.07595970726578 38.0 35.0 41.0 32.0 41.0 19 37.055871222012165 38.0 35.0 41.0 32.0 41.0 20 36.93439374632254 38.0 35.0 41.0 32.0 41.0 21 36.80458041312848 38.0 35.0 41.0 32.0 41.0 22 36.680839452272274 38.0 35.0 41.0 31.0 41.0 23 36.61598522750615 38.0 35.0 40.0 31.0 41.0 24 36.53552988444519 38.0 35.0 40.0 31.0 41.0 25 36.4414174700494 38.0 35.0 40.0 31.0 41.0 26 36.32025638615292 38.0 35.0 40.0 31.0 41.0 27 36.222888226221436 38.0 35.0 40.0 31.0 41.0 28 36.15864502494578 38.0 35.0 40.0 30.0 41.0 29 36.30287050479941 38.0 35.0 40.0 31.0 41.0 30 36.28101161815036 38.0 35.0 40.0 31.0 41.0 31 36.16755447857588 38.0 35.0 40.0 31.0 41.0 32 36.02647550857696 38.0 35.0 40.0 30.0 41.0 33 35.873347103121965 38.0 35.0 40.0 30.0 41.0 34 35.74740793738663 38.0 35.0 40.0 30.0 41.0 35 35.619348032713255 37.0 34.0 40.0 29.0 41.0 36 35.468116672411334 37.0 34.0 40.0 29.0 41.0 37 35.331048523272855 37.0 34.0 40.0 28.0 41.0 38 35.31606234528572 37.0 34.0 40.0 29.0 41.0 39 35.28273240652733 37.0 34.0 40.0 28.0 41.0 40 35.14487654192039 37.0 34.0 40.0 27.0 41.0 41 35.12491905244357 37.0 34.0 40.0 27.0 41.0 42 35.09091368031112 37.0 34.0 40.0 27.0 41.0 43 34.975676564899054 36.0 34.0 40.0 27.0 41.0 44 34.879441670757565 36.0 34.0 40.0 27.0 41.0 45 34.82804127803136 36.0 34.0 40.0 27.0 41.0 46 34.855697489407184 36.0 34.0 40.0 27.0 41.0 47 34.828017777127876 36.0 34.0 40.0 27.0 41.0 48 34.79590596853316 36.0 34.0 40.0 27.0 41.0 49 34.774588908269884 36.0 34.0 40.0 27.0 41.0 50 34.64237282529602 35.0 34.0 40.0 27.0 41.0 51 34.411912956135126 35.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 0.0 11 2.0 12 2.0 13 13.0 14 14.0 15 36.0 16 115.0 17 329.0 18 714.0 19 1485.0 20 2464.0 21 4268.0 22 6492.0 23 9847.0 24 14627.0 25 21423.0 26 29034.0 27 34557.0 28 38953.0 29 45298.0 30 56093.0 31 70663.0 32 90869.0 33 121465.0 34 217784.0 35 329701.0 36 166703.0 37 211966.0 38 309709.0 39 512902.0 40 253.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.395741288128036 24.226385073618754 29.165056419576423 13.21281721867678 2 29.233470160815813 27.039443220076386 30.30646048540681 13.420626133700992 3 28.741169753118655 25.679045549973367 31.467709758619613 14.11207493828837 4 24.645832680530457 28.71631972369901 31.287927847003893 15.349919748766638 5 22.65269494434638 33.12709114520773 30.335096771498105 13.885117138947786 6 21.409105468573202 41.44671561817821 26.4083569212772 10.735821991971395 7 89.99457738412315 3.7974413608938002 4.813768395985001 1.3942128589980607 8 91.96099372264756 2.278978354797492 4.290351051273749 1.4696768712811996 9 87.74349547215927 4.031710552427905 5.985593075763431 2.2392008996494015 10 49.963094877499366 24.54064437736532 13.974202971210522 11.522057773924791 11 43.043645529779994 23.078104817511132 19.409222102686762 14.46902755002211 12 37.47828342437757 22.667752930649705 23.71367369604802 16.140289948924703 13 22.12753679197 38.78314932996313 24.337187481503918 14.75212639656295 14 18.03394052704693 40.33960546335077 26.123865428604255 15.502588580998038 15 17.29792704623237 24.519928766150343 43.20319055228864 14.978953635328649 16 18.17372738255641 20.17657012147356 42.155311378267065 19.494391117702968 17 18.56540910720938 20.700118026759696 27.704866950070155 33.02960591596077 18 23.445763396385384 23.687300459921385 31.606452129530016 21.26048401416321 19 29.198131765213788 24.965096806314257 24.630295972119225 21.20647545635273 20 31.654280820129305 24.34014685453463 23.672285993809687 20.333286331526377 21 23.759108776107762 28.03048502383166 26.559807188143008 21.65059901191757 22 24.60113744372839 24.95103978441838 24.53494323226204 25.912879539591188 23 21.140150684311493 31.30307287369048 24.197226545227924 23.359549896770105 24 21.36545471637021 25.050744543438373 35.24465310925657 18.33914763093485 25 18.916965215181236 26.568467706277005 33.18149138474287 21.333075693798893 26 19.145446221228802 33.03691730815429 26.48952207866362 21.32811439195329 27 20.099713463058322 31.23344056708551 27.943139999234045 20.72370597062213 28 17.84306096656605 27.435346403317283 36.119234880215025 18.602357749901643 29 18.07297813893734 24.57271875859524 35.46643200579341 21.887871096674015 30 20.48730428969825 28.903848229424522 30.10605000295937 20.502797477917856 31 28.190291167490066 26.19393293712551 24.478192902378986 21.137582993005434 32 28.912421707175262 26.290243121198507 25.499959961423702 19.297375210202524 33 27.130139299429363 27.03826817490243 24.548478011858382 21.283114513809828 34 20.329456554663103 26.70742767814555 28.84257179961215 24.1205439675792 35 21.47455983678187 25.495172740344614 30.410952465505897 22.61931495736762 36 29.764590579445237 24.583555286310638 25.692145127653426 19.9597090065907 37 22.31254112658109 29.958864714873112 27.972907810307667 19.75568634823813 38 22.453111345539877 31.30968794281795 24.11075192446287 22.1264487871793 39 22.160829738565504 30.666241909596376 25.9613610330649 21.211567318773216 40 24.353115871639805 26.14714873112529 24.763163117159838 24.736572280075066 41 19.467321558510285 24.43193093867831 25.834064472552686 30.26668303025872 42 23.060783781243146 26.647369813698763 23.99442245224094 26.29742395281715 43 22.796833819018673 27.44909878387177 25.16289607726401 24.591171319845557 44 21.207084739035523 30.702233108072825 26.472723284695164 21.61795886819649 45 19.24985116094463 33.76078865550461 23.412035247873604 23.577324935677158 46 22.535625628866768 31.136259979179943 25.37788582390686 20.95022856804643 47 22.866988367923184 26.880507480250536 27.360535193908564 22.891968957917715 48 24.144088391250005 23.49829226768051 29.126541049985548 23.231078291083932 49 21.601638796335948 23.738958927383948 30.777479519397822 23.881922756882282 50 20.710736953516953 30.897986930016053 26.073643127465417 22.317632989001577 51 20.280888020806135 31.92628201780498 24.16563088610592 23.627199075282967 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 458.0 1 1052.5 2 1647.0 3 4993.0 4 8339.0 5 6616.0 6 4893.0 7 5295.5 8 5698.0 9 6181.5 10 6665.0 11 6829.5 12 6994.0 13 6809.5 14 6625.0 15 6493.0 16 6361.0 17 6030.5 18 5700.0 19 5891.0 20 6082.0 21 6623.0 22 7164.0 23 7237.0 24 7310.0 25 8982.0 26 13214.5 27 15775.0 28 18394.0 29 21013.0 30 26233.5 31 31454.0 32 37593.5 33 43733.0 34 51542.5 35 59352.0 36 63066.0 37 66780.0 38 81950.0 39 97120.0 40 129050.5 41 160981.0 42 184761.0 43 208541.0 44 207845.5 45 207150.0 46 201075.5 47 195001.0 48 191656.0 49 188311.0 50 192221.0 51 196131.0 52 183278.0 53 170425.0 54 152260.5 55 134096.0 56 118610.0 57 103124.0 58 94332.0 59 85540.0 60 76047.5 61 66555.0 62 59431.5 63 52308.0 64 44081.0 65 35854.0 66 31439.0 67 27024.0 68 21995.5 69 16967.0 70 13749.0 71 10531.0 72 9149.5 73 7768.0 74 6519.5 75 4230.0 76 3189.0 77 2374.5 78 1560.0 79 1219.5 80 879.0 81 697.0 82 515.0 83 311.5 84 108.0 85 98.0 86 88.0 87 58.5 88 29.0 89 21.5 90 14.0 91 10.5 92 7.0 93 3.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2297784.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.429310543125645 #Duplication Level Percentage of deduplicated Percentage of total 1 78.72576774830124 14.508616215794287 2 7.649792800170782 2.8196081420982804 3 2.3348631571374923 1.2908975459576884 4 1.186604674949544 0.8747322418627924 5 0.772858367617211 0.7121623431335371 6 0.5563932345596538 0.6152366222276405 7 0.44094048869659386 0.5688360438058978 8 0.3682566476327052 0.5429372895034815 9 0.31301649528463593 0.5191810377049241 >10 4.379832140322102 20.11172897044038 >50 2.1500136920412283 29.22657109052544 >100 1.1190454058147534 27.492433055485655 >500 0.0019019254342298863 0.20829160421245566 >1k 4.7548135855747157E-4 0.26165701732368224 >5k 2.3774067927873578E-4 0.24711077992390618 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5640 0.24545388078252786 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4239 0.18448209231154886 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03829776863273485 0.0 2 0.0 0.0 0.0 0.129211448943852 0.0 3 0.0 0.0 0.0 0.19766871037486552 0.0 4 0.0 0.0 0.0 0.3185242825261208 0.0 5 0.0 0.0 0.0 0.5227210216452025 0.0 6 0.0 0.0 0.0 0.7968547087106534 0.0 7 0.0 0.0 0.0 0.9360322815373421 0.0 8 0.0 0.0 0.0 1.3459924866741173 0.0 9 0.0 0.0 0.0 1.5141545071251257 0.0 10 0.0 0.0 0.0 1.7863297855673117 0.0 11 0.0 0.0 0.0 2.0818318867221635 0.0 12 0.0 0.0 0.0 2.332725791458205 0.0 13 0.0 0.0 0.0 2.446095890649426 0.0 14 0.0 0.0 0.0 2.4936199399073193 0.0 15 0.0 0.0 0.0 2.555549172594117 0.0 16 0.0 0.0 0.0 2.7086532067418 0.0 17 0.0 0.0 0.0 2.8881304770161162 0.0 18 0.0 0.0 0.0 3.118178209962294 0.0 19 0.0 0.0 0.0 3.241427392653095 0.0 20 0.0 0.0 0.0 3.3720314877290467 0.0 21 0.0 0.0 0.0 3.5451112898340313 0.0 22 0.0 0.0 0.0 3.7235005553176452 0.0 23 0.0 0.0 0.0 3.9405357509670185 0.0 24 0.0 0.0 0.0 4.101212298457993 0.0 25 0.0 0.0 0.0 4.237996260745136 0.0 26 0.0 0.0 0.0 4.370906925977376 0.0 27 0.0 0.0 0.0 4.505775999832882 0.0 28 0.0 0.0 0.0 4.6459980572586455 0.0 29 0.0 0.0 0.0 4.799667853897494 0.0 30 0.0 0.0 0.0 4.992592863384896 0.0 31 0.0 0.0 0.0 5.167456993346633 0.0 32 0.0 0.0 0.0 5.337577422420907 0.0 33 0.0 0.0 0.0 5.505434801530518 0.0 34 0.0 0.0 0.0 5.692266984189985 0.0 35 0.0 0.0 0.0 5.90442791837701 0.0 36 0.0 0.0 0.0 6.089736894329493 0.0 37 0.0 0.0 0.0 6.275437552006629 0.0 38 0.0 0.0 0.0 6.466839354787047 0.0 39 0.0 0.0 0.0 6.652670573039067 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGTAGCG 125 0.0 45.000004 1 AATCGGT 25 3.8920265E-5 45.000004 18 CGTCTAC 45 3.8562575E-10 45.0 41 TCTACGA 20 7.0347614E-4 45.0 39 TCGAACG 20 7.0347614E-4 45.0 1 TAATGCG 90 0.0 42.5 1 CGTTTTT 4815 0.0 41.682243 1 CGTTGAT 255 0.0 41.47059 25 CGAGACA 525 0.0 40.285713 22 GCGTAAG 190 0.0 40.263157 1 TACGGGA 700 0.0 39.214287 4 AATGCGG 425 0.0 39.176468 2 TATTCCG 75 0.0 39.0 1 GTTACGG 245 0.0 38.57143 2 TGCGTAG 105 0.0 38.57143 1 TATCTCG 35 6.251017E-6 38.571426 1 TGTTACG 100 0.0 38.250004 1 TATCACG 65 9.094947E-12 38.076927 1 CGTTAGG 325 0.0 38.076923 2 ACTACGG 160 0.0 37.96875 2 >>END_MODULE