Basic Statistics
Measure | Value |
---|---|
Filename | SRR1545368_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 55875 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 125 | 0.22371364653243847 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 121 | 0.21655480984340048 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGATGCC | 60 | 0.0 | 45.000004 | 8 |
CTTTAGG | 20 | 6.975729E-4 | 45.000004 | 2 |
CACGCCA | 40 | 6.6174835E-9 | 45.000004 | 27 |
AGGGTAC | 20 | 6.975729E-4 | 45.000004 | 6 |
ATGCGGG | 20 | 6.975729E-4 | 45.000004 | 3 |
GAGCTAG | 20 | 6.975729E-4 | 45.000004 | 45 |
AAGGGTT | 20 | 6.975729E-4 | 45.000004 | 5 |
AAGGGTC | 20 | 6.975729E-4 | 45.000004 | 5 |
AAGGGCC | 20 | 6.975729E-4 | 45.000004 | 5 |
TAGTTGG | 20 | 6.975729E-4 | 45.000004 | 2 |
AAGGGAC | 30 | 2.1284995E-6 | 45.000004 | 5 |
ACTTCCC | 40 | 6.6174835E-9 | 45.000004 | 44 |
CATAGTT | 20 | 6.975729E-4 | 45.000004 | 36 |
GGTAGGG | 20 | 6.975729E-4 | 45.000004 | 3 |
CATAGGG | 20 | 6.975729E-4 | 45.000004 | 3 |
GGGACCT | 20 | 6.975729E-4 | 45.000004 | 7 |
TAATAGG | 30 | 2.1284995E-6 | 45.000004 | 2 |
GTAGGGT | 20 | 6.975729E-4 | 45.000004 | 4 |
CAAGGGA | 30 | 2.1284995E-6 | 45.000004 | 4 |
TAGGGAA | 40 | 6.6174835E-9 | 45.000004 | 5 |