##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545368_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 55875 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.236706935123042 31.0 31.0 33.0 30.0 34.0 2 31.615212527964207 31.0 31.0 34.0 30.0 34.0 3 31.79856823266219 31.0 31.0 34.0 30.0 34.0 4 35.57950782997763 37.0 35.0 37.0 33.0 37.0 5 35.48771364653244 37.0 35.0 37.0 33.0 37.0 6 35.54652348993289 37.0 35.0 37.0 33.0 37.0 7 35.865557046979866 37.0 35.0 37.0 35.0 37.0 8 35.91169574944072 37.0 35.0 37.0 35.0 37.0 9 37.799284116331094 39.0 37.0 39.0 35.0 39.0 10 37.16978970917226 39.0 37.0 39.0 33.0 39.0 11 36.82480536912752 39.0 35.0 39.0 32.0 39.0 12 36.023624161073826 37.0 35.0 39.0 32.0 39.0 13 35.67336017897092 37.0 35.0 39.0 31.0 39.0 14 36.637351230425054 38.0 35.0 41.0 31.0 41.0 15 36.926335570469796 38.0 35.0 41.0 32.0 41.0 16 37.0255033557047 38.0 35.0 41.0 32.0 41.0 17 36.999570469798655 38.0 35.0 41.0 32.0 41.0 18 36.94663087248322 38.0 35.0 41.0 32.0 41.0 19 36.872984340044745 38.0 35.0 41.0 32.0 41.0 20 36.75772706935123 38.0 35.0 41.0 32.0 41.0 21 36.646854586129756 38.0 35.0 41.0 31.0 41.0 22 36.51133780760627 38.0 35.0 40.0 31.0 41.0 23 36.45385234899329 38.0 35.0 40.0 31.0 41.0 24 36.33313646532439 38.0 35.0 40.0 31.0 41.0 25 36.19606263982103 38.0 35.0 40.0 31.0 41.0 26 36.051919463087245 38.0 35.0 40.0 30.0 41.0 27 35.915901565995526 37.0 35.0 40.0 30.0 41.0 28 35.846425055928414 37.0 35.0 40.0 30.0 41.0 29 35.98478747203579 37.0 35.0 40.0 30.0 41.0 30 36.02920805369128 37.0 35.0 40.0 30.0 41.0 31 35.918156599552574 37.0 35.0 40.0 30.0 41.0 32 35.78505592841163 37.0 34.0 40.0 30.0 41.0 33 35.605780760626395 37.0 34.0 40.0 29.0 41.0 34 35.47371812080537 37.0 34.0 40.0 29.0 41.0 35 35.35847874720358 37.0 34.0 40.0 29.0 41.0 36 35.17929306487696 37.0 34.0 40.0 27.0 41.0 37 35.06686353467561 37.0 34.0 40.0 27.0 41.0 38 35.01791498881432 37.0 34.0 40.0 27.0 41.0 39 34.982156599552575 36.0 34.0 40.0 27.0 41.0 40 34.80103803131991 36.0 34.0 40.0 26.0 41.0 41 34.755328859060405 36.0 34.0 40.0 26.0 41.0 42 34.699847874720355 36.0 33.0 40.0 26.0 41.0 43 34.60656823266219 36.0 33.0 40.0 26.0 41.0 44 34.49308277404922 36.0 33.0 40.0 25.0 41.0 45 34.47069351230425 35.0 33.0 40.0 25.0 41.0 46 34.469261744966445 35.0 33.0 40.0 26.0 41.0 47 34.43665324384787 35.0 33.0 40.0 26.0 41.0 48 34.369324384787475 35.0 33.0 40.0 25.0 41.0 49 34.36144966442953 35.0 33.0 40.0 26.0 41.0 50 34.26774049217002 35.0 33.0 40.0 26.0 41.0 51 34.03151677852349 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 2.0 16 4.0 17 9.0 18 25.0 19 54.0 20 90.0 21 141.0 22 200.0 23 299.0 24 408.0 25 579.0 26 750.0 27 961.0 28 1111.0 29 1167.0 30 1509.0 31 1908.0 32 2343.0 33 3069.0 34 5292.0 35 7868.0 36 4075.0 37 5089.0 38 7140.0 39 11777.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.490827740492165 23.59552572706935 28.842953020134228 14.07069351230425 2 29.61073825503356 26.00447427293065 30.553914988814316 13.830872483221476 3 30.04384787472036 25.789709172259506 30.149440715883667 14.017002237136467 4 26.573601789709173 27.983892617449662 29.897091722595075 15.545413870246087 5 23.513199105145414 32.893064876957496 28.553020134228184 15.040715883668904 6 22.25682326621924 41.68769574944072 25.401342281879195 10.65413870246085 7 89.44250559284116 3.8156599552572708 5.1579418344519015 1.5838926174496646 8 90.97986577181209 2.7883668903803134 4.676510067114094 1.5552572706935124 9 86.07069351230425 4.751677852348993 6.444742729306488 2.732885906040268 10 51.038926174496645 24.477852348993288 12.540492170022372 11.942729306487696 11 43.225055928411635 21.75391498881432 19.89082774049217 15.130201342281879 12 38.98523489932886 22.14765100671141 23.801342281879194 15.065771812080536 13 22.480536912751678 37.007606263982105 24.28993288590604 16.22192393736018 14 18.503803131991052 38.86353467561521 26.421476510067116 16.211185682326622 15 17.281431767337807 23.93557046979866 42.93691275167785 15.846085011185682 16 18.890380313199103 19.001342281879193 42.41073825503356 19.697539149888144 17 19.59910514541387 20.13959731543624 27.44876957494407 32.81252796420582 18 24.10559284116331 24.44384787472036 29.861297539149888 21.589261744966443 19 29.247427293064877 24.565548098434004 24.17897091722595 22.00805369127517 20 32.67293064876958 23.02281879194631 23.35212527964206 20.952125279642058 21 25.43534675615213 25.904250559284115 25.972259507829975 22.68814317673378 22 25.331543624161075 24.86979865771812 24.47427293064877 25.324384787472038 23 23.108724832214765 28.975391498881432 24.014317673378077 23.90156599552573 24 22.79194630872483 24.848322147651007 33.106040268456375 19.253691275167785 25 21.04876957494407 25.734228187919463 30.577181208053688 22.639821029082775 26 20.32393736017897 31.328859060402685 25.41208053691275 22.93512304250559 27 21.45145413870246 29.78255033557047 27.454138702460853 21.311856823266222 28 17.839821029082774 28.157494407158833 34.44653243847875 19.55615212527964 29 18.75436241610738 24.75704697986577 33.95436241610738 22.534228187919464 30 21.100671140939596 27.513199105145414 30.208501118568233 21.177628635346757 31 27.52572706935123 26.75078299776286 23.869351230425057 21.85413870246085 32 28.982550335570465 26.54317673378076 24.740939597315435 19.733333333333334 33 26.32304250559284 27.78523489932886 24.75883668903803 21.13288590604027 34 21.535570469798657 26.732885906040266 28.55659955257271 23.174944071588367 35 22.462639821029082 26.14407158836689 28.182550335570472 23.210738255033558 36 28.808948545861295 25.327964205816556 25.057718120805365 20.80536912751678 37 23.733333333333334 29.188366890380312 27.706487695749445 19.371812080536913 38 23.08545861297539 29.882774049217005 23.71185682326622 23.319910514541387 39 22.62371364653244 29.285011185682325 26.37136465324385 21.71991051454139 40 24.304250559284117 25.58926174496644 25.596420581655483 24.510067114093957 41 19.23758389261745 25.075615212527964 26.521700223713644 29.16510067114094 42 23.625950782997762 26.791946308724835 23.889038031319913 25.693064876957493 43 23.844295302013425 27.518568232662194 24.769574944071586 23.867561521252796 44 22.224608501118567 29.771812080536915 25.807606263982102 22.195973154362417 45 19.912304250559284 32.31498881431767 22.638031319910514 25.134675615212526 46 22.93512304250559 30.41968680089486 25.195525727069352 21.449664429530202 47 24.051901565995525 26.55749440715884 27.037136465324384 22.353467561521253 48 25.5248322147651 22.87606263982103 27.835346756152124 23.763758389261742 49 21.406711409395974 24.374049217002238 29.18657718120805 25.032662192393733 50 20.561968680089485 29.78434004474273 26.627293064876955 23.02639821029083 51 20.465324384787472 31.260850111856826 23.754809843400448 24.519015659955258 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 10.0 1 28.0 2 46.0 3 148.5 4 251.0 5 193.0 6 135.0 7 151.5 8 168.0 9 175.5 10 183.0 11 171.0 12 159.0 13 152.0 14 145.0 15 150.0 16 155.0 17 143.0 18 131.0 19 147.0 20 163.0 21 176.0 22 189.0 23 188.0 24 187.0 25 214.5 26 303.5 27 365.0 28 451.5 29 538.0 30 625.5 31 713.0 32 863.5 33 1014.0 34 1225.5 35 1437.0 36 1474.0 37 1511.0 38 1706.5 39 1902.0 40 2645.5 41 3389.0 42 4067.5 43 4746.0 44 4692.5 45 4639.0 46 4758.5 47 4878.0 48 4603.5 49 4329.0 50 4140.5 51 3952.0 52 3790.0 53 3628.0 54 3386.5 55 3145.0 56 2984.5 57 2824.0 58 2684.5 59 2545.0 60 2395.5 61 2246.0 62 2038.5 63 1831.0 64 1582.5 65 1334.0 66 1140.0 67 946.0 68 784.5 69 623.0 70 551.0 71 479.0 72 366.5 73 254.0 74 232.5 75 160.0 76 109.0 77 84.0 78 59.0 79 46.0 80 33.0 81 26.0 82 19.0 83 11.0 84 3.0 85 4.5 86 6.0 87 4.0 88 2.0 89 1.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 55875.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.374049217002245 #Duplication Level Percentage of deduplicated Percentage of total 1 63.39248865043334 35.73691275167785 2 16.65449696815772 18.77762863534676 3 9.63840121908632 16.300671140939595 4 5.25413505190641 11.847874720357941 5 2.8064382996285597 7.910514541387024 6 1.2286104320772089 4.155704697986577 7 0.5365249690466364 2.117225950782998 8 0.2254039810787644 1.0165548098434003 9 0.12381345439537762 0.6281879194630873 >10 0.13333756627194515 1.0684563758389263 >50 0.0 0.0 >100 0.006349407917711674 0.44026845637583895 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 125 0.22371364653243847 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 121 0.21655480984340048 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.042953020134228186 0.0 2 0.0 0.0 0.0 0.14675615212527965 0.0 3 0.0 0.0 0.0 0.2076062639821029 0.0 4 0.0 0.0 0.0 0.2917225950782998 0.0 5 0.0 0.0 0.0 0.4868008948545861 0.0 6 0.0 0.0 0.0 0.7158836689038032 0.0 7 0.0 0.0 0.0 0.8519015659955257 0.0 8 0.0 0.0 0.0 1.1758389261744966 0.0 9 0.0 0.0 0.0 1.3404921700223713 0.0 10 0.0 0.0 0.0 1.5427293064876957 0.0 11 0.0 0.0 0.0 1.7539149888143177 0.0 12 0.0 0.0 0.0 1.934675615212528 0.0 13 0.0 0.0 0.0 2.0384787472035795 0.0 14 0.0 0.0 0.0 2.0814317673378078 0.0 15 0.0 0.0 0.0 2.1476510067114094 0.0 16 0.0 0.0 0.0 2.2532438478747205 0.0 17 0.0 0.0 0.0 2.396420581655481 0.0 18 0.0 0.0 0.0 2.589709172259508 0.0 19 0.0 0.0 0.0 2.6630872483221477 0.0 20 0.0 0.0 0.0 2.759731543624161 0.0 21 0.0 0.0 0.0 2.883221476510067 0.0 22 0.0 0.0 0.0 3.0156599552572705 0.0 23 0.0 0.0 0.0 3.2143176733780763 0.0 24 0.0 0.0 0.0 3.3181208053691273 0.0 25 0.0 0.0 0.0 3.4237136465324385 0.0 26 0.0 0.0 0.0 3.520357941834452 0.0 27 0.0 0.0 0.0 3.6241610738255035 0.0 28 0.0 0.0 0.0 3.7476510067114095 0.0 29 0.0 0.0 0.0 3.846085011185682 0.0 30 0.0 0.0 0.0 4.0 0.0 31 0.0 0.0 0.0 4.127069351230425 0.0 32 0.0 0.0 0.0 4.221923937360179 0.0 33 0.0 0.0 0.0 4.350782997762863 0.0 34 0.0 0.0 0.0 4.4724832214765105 0.0 35 0.0 0.0 0.0 4.624608501118568 0.0 36 0.0 0.0 0.0 4.755257270693512 0.0 37 0.0 0.0 0.0 4.90738255033557 0.0 38 0.0 0.0 0.0 5.064876957494407 0.0 39 0.0 0.0 0.0 5.204474272930649 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGATGCC 60 0.0 45.000004 8 CTTTAGG 20 6.975729E-4 45.000004 2 CACGCCA 40 6.6174835E-9 45.000004 27 AGGGTAC 20 6.975729E-4 45.000004 6 ATGCGGG 20 6.975729E-4 45.000004 3 GAGCTAG 20 6.975729E-4 45.000004 45 AAGGGTT 20 6.975729E-4 45.000004 5 AAGGGTC 20 6.975729E-4 45.000004 5 AAGGGCC 20 6.975729E-4 45.000004 5 TAGTTGG 20 6.975729E-4 45.000004 2 AAGGGAC 30 2.1284995E-6 45.000004 5 ACTTCCC 40 6.6174835E-9 45.000004 44 CATAGTT 20 6.975729E-4 45.000004 36 GGTAGGG 20 6.975729E-4 45.000004 3 CATAGGG 20 6.975729E-4 45.000004 3 GGGACCT 20 6.975729E-4 45.000004 7 TAATAGG 30 2.1284995E-6 45.000004 2 GTAGGGT 20 6.975729E-4 45.000004 4 CAAGGGA 30 2.1284995E-6 45.000004 4 TAGGGAA 40 6.6174835E-9 45.000004 5 >>END_MODULE