SRR1545359_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545359_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1878334
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4280	0.2278614985407281	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4059	0.2160957529385083	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTACCG	20	7.0344296E-4	45.000004	10
GTATCGA	20	7.0344296E-4	45.000004	9
CGGTAAT	20	7.0344296E-4	45.000004	35
ACGTTAG	45	1.929402E-8	40.0	1
CGCATCG	45	1.929402E-8	40.0	21
TATACGT	45	1.929402E-8	40.0	23
TATGGGT	375	0.0	39.600002	4
TCGTTAC	40	3.4597906E-7	39.375004	37
GTTACGG	195	0.0	39.23077	2
TACGTAG	110	0.0	38.863636	1
ATAGACG	35	6.250406E-6	38.571426	1
TCGAGAC	35	6.250406E-6	38.571426	24
ATACCGG	70	0.0	38.571426	2
TGCGTAT	35	6.250406E-6	38.571426	17
AGTAACG	65	9.094947E-12	38.076927	1
GTTGATC	520	0.0	37.644234	16
CGTTTTT	3935	0.0	37.623886	1
TGACGTA	30	1.1401976E-4	37.500004	13
GCGATCG	30	1.1401976E-4	37.500004	9
ACGTATA	30	1.1401976E-4	37.500004	29