##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545355_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3514449 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.17877795352842 31.0 31.0 33.0 30.0 34.0 2 31.53493477924989 31.0 31.0 34.0 30.0 34.0 3 31.720502132766757 31.0 31.0 34.0 30.0 34.0 4 35.507227164201275 37.0 35.0 37.0 33.0 37.0 5 35.405230236660145 37.0 35.0 37.0 33.0 37.0 6 35.458260171082294 37.0 35.0 37.0 33.0 37.0 7 35.8251068659696 37.0 35.0 37.0 35.0 37.0 8 35.86443650199505 37.0 35.0 37.0 35.0 37.0 9 37.74273150641822 39.0 37.0 39.0 35.0 39.0 10 37.09983129645643 39.0 37.0 39.0 33.0 39.0 11 36.69768347755224 39.0 35.0 39.0 32.0 39.0 12 35.80704628236176 37.0 35.0 39.0 31.0 39.0 13 35.40579106426071 37.0 35.0 39.0 30.0 39.0 14 36.33501894607092 38.0 35.0 41.0 31.0 41.0 15 36.653720682815425 38.0 35.0 41.0 31.0 41.0 16 36.79275727148125 38.0 35.0 41.0 32.0 41.0 17 36.74871309841173 38.0 35.0 41.0 32.0 41.0 18 36.6863946524761 38.0 35.0 40.0 31.0 41.0 19 36.62991154516683 38.0 35.0 40.0 31.0 41.0 20 36.492894618758164 38.0 35.0 40.0 31.0 41.0 21 36.36364078693417 38.0 35.0 40.0 31.0 41.0 22 36.22421836253706 38.0 35.0 40.0 30.0 41.0 23 36.151182731631614 37.0 35.0 40.0 30.0 41.0 24 36.03640371506316 37.0 35.0 40.0 30.0 41.0 25 35.91389290326876 37.0 34.0 40.0 30.0 41.0 26 35.72894470797556 37.0 34.0 40.0 30.0 41.0 27 35.6121946854258 37.0 34.0 40.0 29.0 41.0 28 35.532608098737526 36.0 34.0 40.0 29.0 41.0 29 35.69795663559209 37.0 34.0 40.0 30.0 41.0 30 35.7067611452037 37.0 34.0 40.0 30.0 41.0 31 35.576728243886876 37.0 34.0 40.0 29.0 41.0 32 35.43836516051307 37.0 34.0 40.0 29.0 41.0 33 35.27442737111849 36.0 34.0 40.0 29.0 41.0 34 35.1397200528447 36.0 34.0 40.0 27.0 41.0 35 35.02083655218784 36.0 34.0 40.0 27.0 41.0 36 34.83940640481623 36.0 34.0 40.0 26.0 41.0 37 34.704209678387706 36.0 33.0 40.0 26.0 41.0 38 34.64614623800203 36.0 33.0 40.0 26.0 41.0 39 34.58617780482801 36.0 33.0 40.0 26.0 41.0 40 34.42842021608508 35.0 33.0 40.0 25.0 41.0 41 34.37526707600537 35.0 33.0 40.0 24.0 41.0 42 34.30375202485511 35.0 33.0 40.0 24.0 41.0 43 34.1747133049875 35.0 33.0 40.0 24.0 41.0 44 34.04349586521244 35.0 33.0 40.0 24.0 41.0 45 34.00536357192834 35.0 33.0 40.0 24.0 41.0 46 34.01171705721153 35.0 33.0 39.0 24.0 41.0 47 33.98033034481365 35.0 33.0 39.0 24.0 41.0 48 33.894560712077485 35.0 33.0 39.0 24.0 41.0 49 33.862322088042816 35.0 33.0 39.0 24.0 41.0 50 33.71877924533832 35.0 33.0 39.0 24.0 41.0 51 33.46813881777769 35.0 32.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 7.0 11 4.0 12 11.0 13 18.0 14 50.0 15 115.0 16 340.0 17 858.0 18 1872.0 19 3622.0 20 6392.0 21 10016.0 22 14922.0 23 21617.0 24 30492.0 25 41186.0 26 54019.0 27 65612.0 28 74838.0 29 86934.0 30 103707.0 31 126035.0 32 155532.0 33 201939.0 34 352971.0 35 510679.0 36 258734.0 37 318267.0 38 428393.0 39 644876.0 40 389.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.161642692780575 23.49324175710047 28.488078785607645 12.857036764511307 2 30.453564698193087 25.42005873466936 30.142534434274047 13.983842132863503 3 29.714103121143598 25.53595172386909 30.284804246696993 14.46514090829032 4 26.614698349584813 28.194604616541596 29.717830590229077 15.47286644364451 5 23.870911201158417 32.86082683231425 28.707658014101217 14.560603952426113 6 22.79828217737688 41.758779256719905 24.96018579299344 10.482752772909778 7 88.83540492407202 4.05321004800468 5.298440808217732 1.812944219705564 8 90.0118909109223 2.9220796773548283 5.026790828377364 2.0392385833454973 9 85.16472994771014 4.643146052197656 7.005337109743234 3.186786890348957 10 54.394472647063594 20.345977420642612 12.508646447850005 12.750903484443793 11 45.77144240818404 20.807415330255182 17.96034029800973 15.460801963551043 12 39.36326860910487 21.395416464999208 23.29992553598018 15.941389389915745 13 22.855958359333144 36.16882760284756 24.23981682477111 16.735397213048188 14 18.09745994322296 38.838862080513906 26.74353789171503 16.320140084548104 15 17.15606059442035 22.211874464531995 43.679620902167024 16.952444038880632 16 18.488019032286427 18.028772077785167 41.97141571836723 21.511793171561173 17 19.554274368471418 18.487421499074248 27.4870968393623 34.471207293092036 18 24.299342514288867 21.832953046124725 31.405435105190033 22.462269334396375 19 30.813564231548103 22.925129942133175 23.58944460426087 22.671861222057853 20 31.898627636935405 22.996606295894466 22.918073359437 22.186692707733133 21 25.416957252758543 26.149020799562035 25.267858489339297 23.16616345834013 22 25.61044419765374 23.379255183387208 23.837449341276542 27.172851277682504 23 23.498704917897513 28.46366528579587 23.080943840698783 24.956685955607835 24 23.010434921661975 23.627430644177792 33.75928915172762 19.60284528243261 25 21.08512600410477 24.184360051888646 31.811757689469957 22.91875625453663 26 20.381971683185615 30.65752270128262 25.451699540952223 23.508806074579542 27 22.295415298386743 29.286440065000228 26.46497359899091 21.953171037622113 28 18.69527769502417 27.12672740449499 34.001660004171356 20.17633489630949 29 19.079776090078415 24.172665473307482 33.305562265948375 23.44199617066573 30 21.49682638729428 27.045747427263844 29.134211365707685 22.32321481973419 31 29.522721769472255 24.84434971171868 23.01791831379542 22.615010205013643 32 29.652443384439497 26.252137959606188 23.886959235999726 20.208459419954593 33 27.835714787723482 25.63642266540217 24.52227931035562 22.005583236518724 34 21.30917250470842 26.35798670004886 27.634403003145014 24.698437792097707 35 22.992651195109104 25.06907910742196 28.443519880356778 23.494749817112158 36 30.10525974341924 24.45649374909125 24.531128492688328 20.90711801480118 37 23.585290325738118 29.357518063286737 26.231565744729828 20.82562586624532 38 23.398148614476977 31.15609303193758 22.760495315197346 22.685263038388097 39 22.95423834575491 29.23917803331333 24.906891521259805 22.899692099671952 40 24.41500787178872 25.53378922272026 24.288273922882365 25.762928982608653 41 20.361314106421805 23.556580277591166 25.350460342432058 30.731645273554975 42 23.358626060585884 26.182539567368885 23.27394706823175 27.184887303813486 43 23.738088104280358 25.915470675488532 24.95019845216135 25.39624276806976 44 22.4330471149247 29.093180751804905 25.77220497437863 22.701567158891763 45 20.31601539814634 31.93282929984188 22.458997128710646 25.292158173301132 46 23.655429343262625 29.34075867938331 25.476113040763998 21.52769893659006 47 24.50876367817544 24.9177893888914 26.249064931657852 24.324382001275307 48 24.69385670413769 22.616660534837752 28.206526826822643 24.482955934201918 49 22.53747315724314 22.560577774780626 29.76233258755498 25.139616480421257 50 20.815353985788384 29.642968214932125 26.267104743873084 23.274573055406407 51 20.90660584347646 30.88509749323436 23.46931197465093 24.738984688638247 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 761.0 1 2584.5 2 4408.0 3 10495.5 4 16583.0 5 12522.0 6 8461.0 7 8638.5 8 8816.0 9 9165.0 10 9514.0 11 9826.0 12 10138.0 13 10164.0 14 10190.0 15 10010.5 16 9831.0 17 9227.5 18 8624.0 19 8693.5 20 8763.0 21 8383.0 22 8003.0 23 9130.0 24 10257.0 25 11309.5 26 16253.5 27 20145.0 28 22652.0 29 25159.0 30 30978.5 31 36798.0 32 44585.5 33 52373.0 34 54852.0 35 57331.0 36 61119.5 37 64908.0 38 83555.0 39 102202.0 40 146272.0 41 190342.0 42 244919.0 43 299496.0 44 310729.5 45 321963.0 46 320137.5 47 318312.0 48 292142.5 49 265973.0 50 256940.5 51 247908.0 52 233695.0 53 219482.0 54 207851.5 55 196221.0 56 187931.5 57 179642.0 58 175222.0 59 170802.0 60 162922.0 61 155042.0 62 145284.0 63 135526.0 64 118120.5 65 100715.0 66 88280.5 67 75846.0 68 63973.5 69 52101.0 70 43953.0 71 35805.0 72 31911.5 73 28018.0 74 22456.5 75 13586.0 76 10277.0 77 7475.0 78 4673.0 79 3345.0 80 2017.0 81 1608.0 82 1199.0 83 723.0 84 247.0 85 195.0 86 143.0 87 122.5 88 102.0 89 69.5 90 37.0 91 34.0 92 31.0 93 18.0 94 5.0 95 2.5 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3514449.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.44575122051765 #Duplication Level Percentage of deduplicated Percentage of total 1 80.00052938194482 13.15668803725177 2 8.461588941184917 2.78314373314021 3 2.754411624272455 1.358951049950602 4 1.2513178697372402 0.8231544953394706 5 0.7074748662329868 0.5817477822418353 6 0.4534127435470689 0.44740279083524787 7 0.35294921896299924 0.4063160533979047 8 0.2578473276654549 0.33923944029290953 9 0.19533263825497757 0.2891152776589857 >10 2.2607082994282837 9.102514077928316 >50 1.2523162415713074 15.255337591118131 >100 2.039336576213308 53.31990837934379 >500 0.010149420781976563 1.0961125477266853 >1k 0.002274870175270609 0.5879143887184534 >5k 3.4998002696470906E-4 0.452454355055633 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8140 0.23161525462455138 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7582 0.21573794355815093 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0512740403972287 0.0 2 0.0 0.0 0.0 0.16870354357112594 0.0 3 0.0 0.0 0.0 0.25025260005195693 0.0 4 0.0 0.0 0.0 0.4401258917116168 0.0 5 0.0 0.0 0.0 0.7507008922309016 0.0 6 0.0 0.0 0.0 1.145414259817115 0.0 7 0.0 0.0 0.0 1.358164537314384 0.0 8 0.0 0.0 0.0 1.947616824145122 0.0 9 0.0 0.0 0.0 2.186459385240759 0.0 10 0.0 0.0 0.0 2.540312862699103 0.0 11 0.0 0.0 0.0 2.882841663088581 0.0 12 0.0 0.0 0.0 3.1800433012401093 0.0 13 0.0 0.0 0.0 3.3052122822098142 0.0 14 0.0 0.0 0.0 3.349856549348134 0.0 15 0.0 0.0 0.0 3.4195403034728913 0.0 16 0.0 0.0 0.0 3.5743867673140226 0.0 17 0.0 0.0 0.0 3.751228144155741 0.0 18 0.0 0.0 0.0 3.9872253090029193 0.0 19 0.0 0.0 0.0 4.1051669835015385 0.0 20 0.0 0.0 0.0 4.23235619580765 0.0 21 0.0 0.0 0.0 4.393121083845576 0.0 22 0.0 0.0 0.0 4.562166074966517 0.0 23 0.0 0.0 0.0 4.7535474266378595 0.0 24 0.0 0.0 0.0 4.911097016915027 0.0 25 0.0 0.0 0.0 5.03327833182385 0.0 26 2.845396248458862E-5 0.0 0.0 5.1586180365684635 0.0 27 2.845396248458862E-5 0.0 0.0 5.270868918570166 0.0 28 2.845396248458862E-5 0.0 0.0 5.395753359915025 0.0 29 2.845396248458862E-5 0.0 0.0 5.524336816382881 0.0 30 2.845396248458862E-5 0.0 0.0 5.69528822299029 0.0 31 2.845396248458862E-5 0.0 0.0 5.850646858156144 0.0 32 2.845396248458862E-5 0.0 0.0 6.002164208386578 0.0 33 2.845396248458862E-5 0.0 0.0 6.148019220082579 0.0 34 2.845396248458862E-5 0.0 0.0 6.3070768703714295 0.0 35 2.845396248458862E-5 0.0 0.0 6.488157887623352 0.0 36 2.845396248458862E-5 0.0 0.0 6.645792839787973 0.0 37 2.845396248458862E-5 0.0 0.0 6.797224828130953 0.0 38 2.845396248458862E-5 0.0 0.0 6.947091848537282 0.0 39 2.845396248458862E-5 0.0 0.0 7.1064909463759465 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCCTAT 35 1.212884E-7 45.0 35 ACGTCGT 20 7.03527E-4 45.0 39 TTACGTA 25 3.8924503E-5 45.0 20 CGTTTCA 20 7.03527E-4 45.0 23 AATCGGC 20 7.03527E-4 45.0 10 CATACGT 30 2.166782E-6 44.999996 42 GTACGTC 30 2.166782E-6 44.999996 3 ATATACG 100 0.0 42.75 1 TTTTACG 90 0.0 42.5 1 CTAAGCG 140 0.0 41.785713 1 AATGCGG 420 0.0 41.785713 2 ATGCGAA 55 6.184564E-11 40.909092 19 AAATGCG 105 0.0 40.714287 1 CGGTTAT 50 1.0822987E-9 40.5 38 CGTAAGG 470 0.0 39.734043 2 TCGCTAA 40 3.4609366E-7 39.375 40 CATCGCA 40 3.4609366E-7 39.375 19 ATAGGGC 1435 0.0 37.94425 4 AGGGCGA 3990 0.0 37.894737 6 GGGCGAT 7685 0.0 37.62199 7 >>END_MODULE