##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545350_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 46525 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.16973670069855 31.0 31.0 33.0 30.0 33.0 2 31.543965609887156 31.0 31.0 34.0 30.0 34.0 3 31.719656098871575 31.0 31.0 34.0 30.0 34.0 4 35.53695862439549 37.0 35.0 37.0 33.0 37.0 5 35.42693175711983 37.0 35.0 37.0 33.0 37.0 6 35.49659322944653 37.0 35.0 37.0 33.0 37.0 7 35.81472326706072 37.0 35.0 37.0 35.0 37.0 8 35.85508866200967 37.0 35.0 37.0 35.0 37.0 9 37.74067705534659 39.0 37.0 39.0 35.0 39.0 10 37.12367544331005 39.0 37.0 39.0 33.0 39.0 11 36.737216550241804 39.0 35.0 39.0 32.0 39.0 12 36.09442235357335 38.0 35.0 39.0 32.0 39.0 13 35.839376679204726 38.0 35.0 39.0 31.0 39.0 14 36.82448146157979 39.0 35.0 41.0 31.0 41.0 15 37.012079527135946 39.0 35.0 41.0 32.0 41.0 16 37.087802256851155 39.0 35.0 41.0 32.0 41.0 17 37.02207415368082 38.0 35.0 41.0 32.0 41.0 18 36.94033315421816 38.0 35.0 41.0 32.0 41.0 19 36.91503492745836 38.0 35.0 41.0 31.0 41.0 20 36.7905427189683 38.0 35.0 41.0 31.0 41.0 21 36.67645351961311 38.0 35.0 41.0 31.0 41.0 22 36.57164965072542 38.0 35.0 40.0 31.0 41.0 23 36.44453519613111 38.0 35.0 40.0 31.0 41.0 24 36.31692638366469 38.0 35.0 40.0 30.0 41.0 25 36.172358946802795 38.0 35.0 40.0 30.0 41.0 26 35.96195593766792 38.0 35.0 40.0 30.0 41.0 27 35.82854379365932 38.0 34.0 40.0 30.0 41.0 28 35.72833960236432 37.0 34.0 40.0 29.0 41.0 29 35.8896937130575 38.0 35.0 40.0 30.0 41.0 30 35.865964535196134 38.0 35.0 40.0 30.0 41.0 31 35.80827512090274 38.0 34.0 40.0 30.0 41.0 32 35.64221386351424 38.0 34.0 40.0 29.0 41.0 33 35.476990865126275 37.0 34.0 40.0 29.0 41.0 34 35.30648038688877 37.0 34.0 40.0 27.0 41.0 35 35.17676518001075 37.0 34.0 40.0 27.0 41.0 36 34.99963460505105 37.0 34.0 40.0 26.0 41.0 37 34.917958087049975 37.0 34.0 40.0 26.0 41.0 38 34.840515851692636 37.0 33.0 40.0 26.0 41.0 39 34.77983879634605 36.0 33.0 40.0 26.0 41.0 40 34.62026867275658 36.0 33.0 40.0 25.0 41.0 41 34.52507254164428 36.0 33.0 40.0 25.0 41.0 42 34.45603439011284 36.0 33.0 40.0 25.0 41.0 43 34.33803331542182 36.0 33.0 40.0 24.0 41.0 44 34.1993551853842 35.0 33.0 40.0 24.0 41.0 45 34.14766254701773 35.0 33.0 40.0 23.0 41.0 46 34.1394734013971 35.0 33.0 40.0 24.0 41.0 47 34.095239118753355 35.0 33.0 40.0 24.0 41.0 48 34.00414830736163 35.0 33.0 40.0 23.0 41.0 49 33.91907576571736 35.0 33.0 39.0 24.0 41.0 50 33.79946265448684 35.0 33.0 39.0 24.0 41.0 51 33.571413218699625 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 0.0 16 6.0 17 7.0 18 32.0 19 49.0 20 84.0 21 135.0 22 189.0 23 260.0 24 403.0 25 477.0 26 698.0 27 881.0 28 969.0 29 1069.0 30 1355.0 31 1619.0 32 1982.0 33 2570.0 34 4252.0 35 5784.0 36 3714.0 37 4665.0 38 6215.0 39 9106.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.961848468565286 23.439011284255777 28.541644277270283 13.05749596990865 2 31.20902740462117 25.581945190757654 29.708758731864588 13.500268672756583 3 29.90435249865664 25.734551316496507 30.16012896292316 14.200967221923696 4 26.645889306824287 28.51370231058571 29.38420204191295 15.456206340677056 5 24.206340677055348 32.47931219774315 28.31166039763568 15.002686727565825 6 23.101558301988177 41.375604513702314 25.00376141859216 10.519075765717357 7 89.0918860827512 3.9613111230521225 5.250940354648039 1.69586243954863 8 89.93014508328856 2.972595378828587 5.218699623858141 1.8785599140247178 9 85.16066630843633 4.75873186458893 7.013433637829124 3.0671681891456206 10 49.96238581407845 23.174637291778613 13.111230521225147 13.751746372917786 11 40.391187533584095 22.94465341214401 19.85169263836647 16.812466415905426 12 35.344438473938744 21.803331542181624 25.281031703385278 17.571198280494357 13 23.890381515314346 31.303600214938204 26.108543793659322 18.697474476088125 14 19.761418592154754 32.93927995701236 27.64535196131112 19.653949489521764 15 20.18054809242343 22.031166039763566 39.08006448146158 18.708221386351422 16 21.900053734551317 18.63084363245567 38.224610424502956 21.24449220849006 17 22.018269747447608 19.905427189682968 27.752821063944115 30.32348199892531 18 25.263836646964 22.488984416980117 29.457281031703385 22.7898979043525 19 29.618484685652874 23.909725953788286 23.733476625470175 22.738312735088662 20 31.72917786136486 22.540569586243954 24.068780225685117 21.661472326706072 21 26.76410531972058 25.008060182697474 25.652874798495436 22.574959699086513 22 26.078452444922085 23.791509940891995 23.849543256313808 26.280494357872115 23 24.526598602901668 27.602364320257927 23.598065556152605 24.272971520687804 24 24.45996775926921 23.013433637829124 31.636754433100485 20.889844169801183 25 23.57012358946803 23.484148307361632 29.076840408382594 23.868887694787748 26 22.620096722192372 28.208490059108005 25.162815690488983 24.00859752821064 27 23.20687802256851 27.23481998925309 26.76410531972058 22.79419666845782 28 21.23804406233208 26.256851155292853 31.52713594841483 20.977968833960237 29 22.00752283718431 24.423428264373992 29.966684578183774 23.602364320257927 30 23.761418592154758 25.977431488447074 27.65394948952176 22.60720042987641 31 28.747984954325634 24.77592692101021 23.6732939279957 22.802794196668458 32 29.321869962385815 25.43793659322945 24.28586781300376 20.954325631380975 33 27.868887694787748 25.40784524449221 24.341751746372918 22.381515314347126 34 23.07791509940892 25.594841483073616 27.314347125201504 24.012896292315958 35 23.813003761418592 24.64911337990328 28.023643202579258 23.51423965609887 36 28.337452982267596 25.575497044599675 24.582482536270824 21.5045674368619 37 24.6211714132187 28.874798495432564 25.73240193444385 20.77162815690489 38 23.808704997313274 29.2315959161741 24.012896292315958 22.946802794196667 39 24.053734551316495 28.279419666845783 24.640515851692637 23.026329930145085 40 24.90274046211714 25.2745835572273 25.22944653412144 24.59322944653412 41 21.184309511015584 24.073078989790435 25.788285867813006 28.95432563138098 42 23.565824825362707 25.84416980118216 23.583019881783986 27.00698549167114 43 23.65394948952176 25.927995701235893 25.10908113917249 25.308973670069857 44 22.865126276195593 27.50994089199355 25.36055883933369 24.26437399247716 45 21.919398173025257 29.60558839333692 23.7270284793122 24.74798495432563 46 24.047286405158516 28.09887157442235 25.644277270284793 22.209564750134337 47 24.498656636217085 25.75174637291779 26.372917786136483 23.37667920472864 48 24.965072541644275 23.142396560988715 27.501343363782908 24.391187533584095 49 22.75980655561526 23.387426114991943 28.868350349274586 24.984416980118215 50 21.440085975282106 27.81515314347125 27.000537345513166 23.74422353573348 51 21.723804406233207 28.662009672219234 24.631918323482 24.982267598065555 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7.0 1 39.0 2 71.0 3 171.0 4 271.0 5 204.0 6 137.0 7 135.5 8 134.0 9 131.5 10 129.0 11 121.5 12 114.0 13 115.0 14 116.0 15 130.5 16 145.0 17 122.5 18 100.0 19 103.0 20 106.0 21 105.0 22 104.0 23 126.5 24 149.0 25 172.5 26 238.0 27 280.0 28 321.5 29 363.0 30 439.0 31 515.0 32 581.0 33 647.0 34 818.0 35 989.0 36 1102.5 37 1216.0 38 1337.5 39 1459.0 40 1917.0 41 2375.0 42 2825.5 43 3276.0 44 3324.5 45 3373.0 46 3325.5 47 3278.0 48 3260.5 49 3243.0 50 3200.5 51 3158.0 52 2995.5 53 2833.0 54 2819.0 55 2805.0 56 2646.5 57 2488.0 58 2578.0 59 2668.0 60 2517.0 61 2366.0 62 2255.5 63 2145.0 64 1866.0 65 1587.0 66 1374.5 67 1162.0 68 1030.5 69 899.0 70 743.5 71 588.0 72 509.5 73 431.0 74 351.5 75 207.0 76 142.0 77 110.5 78 79.0 79 69.5 80 60.0 81 43.5 82 27.0 83 20.0 84 13.0 85 9.0 86 5.0 87 3.5 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 46525.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 67.04997313272433 #Duplication Level Percentage of deduplicated Percentage of total 1 70.87674306779932 47.522837184309516 2 17.45792594967142 23.411069317571197 3 7.273601538708125 14.63084363245567 4 2.779291553133515 7.454056958624395 5 0.9520756531495432 3.1918323481998927 6 0.384677031575573 1.5475550779150995 7 0.12181439333226478 0.5717356260075228 8 0.03205641929796442 0.17195056421278881 9 0.0384677031575573 0.2321332616872649 >10 0.0769354063151146 0.8554540569586244 >50 0.0032056419297964416 0.1289629231595916 >100 0.0032056419297964416 0.2815690488984417 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 131 0.2815690488984417 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 60 0.1289629231595916 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03653949489521763 0.0 2 0.0 0.0 0.0 0.12681354110693177 0.0 3 0.0 0.0 0.0 0.199892530897367 0.0 4 0.0 0.0 0.0 0.29661472326706073 0.0 5 0.0 0.0 0.0 0.4986566362170876 0.0 6 0.0 0.0 0.0 0.7307898979043524 0.0 7 0.0 0.0 0.0 0.8619022031166039 0.0 8 0.0 0.0 0.0 1.2573885008060182 0.0 9 0.0 0.0 0.0 1.4551316496507254 0.0 10 0.0 0.0 0.0 1.6872649113379903 0.0 11 0.0 0.0 0.0 1.9494895217624932 0.0 12 0.0 0.0 0.0 2.170875873186459 0.0 13 0.0 0.0 0.0 2.2568511552928534 0.0 14 0.0 0.0 0.0 2.30843632455669 0.0 15 0.0 0.0 0.0 2.366469639978506 0.0 16 0.0 0.0 0.0 2.4653412144008597 0.0 17 0.0 0.0 0.0 2.6329930145083287 0.0 18 0.0 0.0 0.0 2.830736163353036 0.0 19 0.0 0.0 0.0 2.9210102095647503 0.0 20 0.0 0.0 0.0 3.0392262224610422 0.0 21 0.0 0.0 0.0 3.1660397635679742 0.0 22 0.0 0.0 0.0 3.329392799570124 0.0 23 0.0 0.0 0.0 3.481998925308974 0.0 24 0.0 0.0 0.0 3.6109618484685653 0.0 25 0.0 0.0 0.0 3.703385276732939 0.0 26 0.0 0.0 0.0 3.7893605588393338 0.0 27 0.0 0.0 0.0 3.911875335840946 0.0 28 0.0 0.0 0.0 4.042987641053197 0.0 29 0.0 0.0 0.0 4.15045674368619 0.0 30 0.0 0.0 0.0 4.288017195056422 0.0 31 0.0 0.0 0.0 4.425577646426652 0.0 32 0.0 0.0 0.0 4.558839333691564 0.0 33 0.0 0.0 0.0 4.677055346587856 0.0 34 0.0 0.0 0.0 4.786673831273509 0.0 35 0.0 0.0 0.0 4.941429339065019 0.0 36 0.0 0.0 0.0 5.087587318645889 0.0 37 0.0 0.0 0.0 5.22729715206878 0.0 38 0.0 0.0 0.0 5.343363782912412 0.0 39 0.0 0.0 0.0 5.485222998387964 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGGGTC 35 1.17865056E-7 45.000004 6 AGCCCAC 20 6.963608E-4 45.0 11 ACTAATC 40 6.5756467E-9 45.0 10 GTAGACA 20 6.963608E-4 45.0 42 GGATGAC 20 6.963608E-4 45.0 8 GTCATGA 20 6.963608E-4 45.0 24 TATACTA 40 6.5756467E-9 45.0 44 GGCACCG 25 3.8331687E-5 45.0 8 CCTACAC 40 6.5756467E-9 45.0 28 TGCAAGG 25 3.8331687E-5 45.0 2 TGTCTGG 20 6.963608E-4 45.0 2 TCAGGGT 20 6.963608E-4 45.0 4 GGACTCA 20 6.963608E-4 45.0 8 AAATATA 40 6.5756467E-9 45.0 35 AGAGGGT 20 6.963608E-4 45.0 4 AATTATA 40 6.5756467E-9 45.0 41 TGACAGG 20 6.963608E-4 45.0 2 AGGGTAG 20 6.963608E-4 45.0 6 GAGCCCA 20 6.963608E-4 45.0 10 AAGGGCG 25 3.8331687E-5 45.0 5 >>END_MODULE