SRR1545346_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545346_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2921859
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7020	0.2402580001293697	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6000	0.2053487180592903	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCTA	35	1.212793E-7	45.000004	31
CTATCGA	45	3.8562575E-10	45.0	14
TAGTTCG	25	3.8922888E-5	45.0	1
TCGCTAA	25	3.8922888E-5	45.0	37
TACGACG	60	3.6379788E-12	41.250004	1
CTATACG	110	0.0	40.909092	1
TCGTACA	50	1.0822987E-9	40.5	41
CTATGCG	45	1.9301297E-8	40.0	1
CGTTTTT	6480	0.0	39.791668	1
CGTAAGG	450	0.0	39.5	2
ACACGTC	40	3.4606637E-7	39.375	12
TACGGGT	255	0.0	38.82353	4
TACGGGA	1105	0.0	38.687786	4
AGGGCGA	3780	0.0	38.630955	6
CGACGAA	35	6.2515974E-6	38.57143	2
CCTAACG	35	6.2515974E-6	38.57143	42
ATCGGCA	35	6.2515974E-6	38.57143	39
GGGCGAT	6975	0.0	38.129032	7
CTACGGG	605	0.0	37.933887	3
TAACACG	95	0.0	37.894737	1