##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545341_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2047973 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.318590137662948 31.0 31.0 33.0 30.0 34.0 2 31.692077971731074 31.0 31.0 34.0 30.0 34.0 3 31.854497593474132 31.0 31.0 34.0 30.0 34.0 4 35.64136050621761 37.0 35.0 37.0 33.0 37.0 5 35.567371737810994 37.0 35.0 37.0 33.0 37.0 6 35.62329581493506 37.0 35.0 37.0 33.0 37.0 7 35.93639808727947 37.0 35.0 37.0 35.0 37.0 8 35.98212720577859 37.0 35.0 37.0 35.0 37.0 9 37.87808384192565 39.0 38.0 39.0 35.0 39.0 10 37.2930346249682 39.0 37.0 39.0 34.0 39.0 11 36.92484080600672 39.0 37.0 39.0 33.0 39.0 12 36.0568982110604 37.0 35.0 39.0 32.0 39.0 13 35.63990394404614 37.0 35.0 39.0 31.0 39.0 14 36.54279084734027 38.0 35.0 41.0 31.0 41.0 15 36.85507523780831 38.0 35.0 41.0 32.0 41.0 16 36.99812790500656 38.0 35.0 41.0 32.0 41.0 17 36.960725556440444 38.0 35.0 41.0 32.0 41.0 18 36.910046665654285 38.0 35.0 40.0 32.0 41.0 19 36.88236417179328 38.0 35.0 41.0 32.0 41.0 20 36.755291207452444 38.0 35.0 40.0 32.0 41.0 21 36.60767842154169 38.0 35.0 40.0 31.0 41.0 22 36.509433962264154 38.0 35.0 40.0 31.0 41.0 23 36.464392352828874 38.0 35.0 40.0 31.0 41.0 24 36.359782086970874 38.0 35.0 40.0 31.0 41.0 25 36.258744133833794 38.0 35.0 40.0 31.0 41.0 26 36.09356129206782 37.0 35.0 40.0 31.0 41.0 27 35.987802085281395 37.0 35.0 40.0 30.0 41.0 28 35.92707276902576 37.0 35.0 40.0 30.0 41.0 29 36.053613011499664 37.0 35.0 40.0 30.0 41.0 30 36.06069904241902 37.0 35.0 40.0 30.0 41.0 31 35.92282661929625 37.0 35.0 40.0 30.0 41.0 32 35.78811585894931 37.0 34.0 40.0 30.0 41.0 33 35.625412542059884 37.0 34.0 40.0 30.0 41.0 34 35.48642291670838 37.0 34.0 40.0 29.0 41.0 35 35.352311285353856 37.0 34.0 40.0 29.0 41.0 36 35.18285104344638 37.0 34.0 40.0 27.0 41.0 37 35.054522203173576 36.0 34.0 40.0 27.0 41.0 38 35.01505781570363 36.0 34.0 40.0 27.0 41.0 39 34.96612455339987 36.0 34.0 40.0 27.0 41.0 40 34.80900334135264 36.0 34.0 40.0 26.0 41.0 41 34.78629991703992 36.0 34.0 40.0 26.0 41.0 42 34.74629987797691 36.0 34.0 40.0 27.0 41.0 43 34.62371427748315 35.0 33.0 40.0 26.0 41.0 44 34.48347268250119 35.0 33.0 40.0 26.0 41.0 45 34.45645181845659 35.0 33.0 40.0 26.0 41.0 46 34.48918613673129 35.0 34.0 40.0 26.0 41.0 47 34.463229739845204 35.0 33.0 40.0 26.0 41.0 48 34.39555160151037 35.0 34.0 40.0 26.0 41.0 49 34.38030725991017 35.0 34.0 40.0 26.0 41.0 50 34.255017033915976 35.0 33.0 39.0 26.0 41.0 51 34.02002711949816 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 5.0 12 7.0 13 10.0 14 18.0 15 65.0 16 152.0 17 344.0 18 792.0 19 1556.0 20 2716.0 21 4532.0 22 6847.0 23 9991.0 24 14581.0 25 20518.0 26 27582.0 27 32942.0 28 37627.0 29 43546.0 30 53477.0 31 66771.0 32 84442.0 33 113935.0 34 206747.0 35 300872.0 36 148847.0 37 187216.0 38 264374.0 39 417218.0 40 241.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.707049360514034 23.664765111649423 28.692663428668247 12.9355220991683 2 32.10017905509496 25.231192012785325 29.35834603288227 13.310282899237441 3 29.749903929397508 25.372990757202363 30.576379669067904 14.300725644332225 4 26.360992063860216 28.39671226134329 29.216156658315317 16.026139016481174 5 24.00637117774502 31.89407282224912 28.569566102678113 15.529989897327749 6 22.27807690824049 40.880177619529164 25.8088851757323 11.03286029649805 7 88.88183584451554 4.250446661162037 5.341916128777088 1.5258013655453464 8 90.5172089671104 2.7848023387027077 4.984831342991338 1.7131573511955478 9 86.05767751820946 4.242634058163853 6.921673283778644 2.7780151398480353 10 52.63658261119654 21.382264316961212 13.15544687356718 12.825706198275075 11 45.61554278303473 22.231982550551205 18.31713601692991 13.83533864948415 12 39.91795790276532 21.923531218429147 23.32442859354103 14.834082285264502 13 23.893967352108646 36.99247988132656 24.056567152008352 15.056985614556442 14 18.836381143696716 39.03884475039466 26.822765729821636 15.30200837608699 15 17.043828214532127 23.16910428018338 44.44536134021298 15.34170616507151 16 19.655532568056316 18.469970063081888 42.568236983593046 19.30626038526875 17 20.633084518204097 19.206307895660736 26.77999172840658 33.38061585772859 18 23.984691204425058 23.362173231776005 31.519556166023673 21.13357939777526 19 30.736977489449323 23.378042581616064 24.580548669342807 21.3044312595918 20 31.866631054217997 24.116187078638244 23.148059080857024 20.869122786286734 21 24.76033619583852 26.639657847051694 27.432832366442334 21.167173590667453 22 24.801694162960157 24.61746321850923 25.40765918300681 25.17318343552381 23 22.36157410278358 29.486668037127444 24.372831087128592 23.778926772960386 24 22.413918542871414 24.98421610050523 33.832867913785975 18.76899744283738 25 20.564480098126296 24.737289016993877 32.56991181036078 22.128319074519048 26 19.88185391115996 30.916081413182695 26.73199304873648 22.470071626920863 27 21.330505822098242 30.113629427731713 27.768725466595505 20.78713928357454 28 18.549219154744716 27.060317689735168 35.1757078828676 19.21475527265252 29 19.055134027645874 24.898765755212594 34.75133705375998 21.29476316338155 30 21.836225379924443 27.224333523928294 30.21192173920262 20.727519356944647 31 28.67889371588395 25.641402498958726 24.474736727486153 21.20496705767117 32 30.226082082136823 25.69965522006394 25.06297690448067 19.011285793318564 33 28.260479996562456 25.675387322000827 25.174013524592365 20.890119156844353 34 22.221337878966178 25.677291643981636 28.806483288598045 23.294887188454144 35 22.055320065254765 25.566596825251114 29.903519235849302 22.47456387364482 36 30.51246281078901 23.2647598381424 26.0975608565152 20.125216494553396 37 23.83698417899064 28.641637365336358 27.81843315317145 19.702945302501547 38 23.381948883115157 30.463096925594236 23.148498539775673 23.006455651514937 39 22.948007615334774 28.927188004919984 26.625985791804872 21.49881858794037 40 25.07567238435272 25.247940280462682 24.96468459300977 24.711702742174822 41 19.939081228121662 23.79875125306828 26.2365275323454 30.025639986464665 42 23.812472137083837 26.000586921800238 23.939719908416762 26.247221032699166 43 23.490251092177488 26.364263591365706 25.444817876016916 24.70066744043989 44 22.343702773425235 29.41884487734946 26.708994698660575 21.52845765056473 45 19.49840159025534 32.08767889029787 24.103198626153763 24.310720893293027 46 22.94659158104135 29.94985773738228 26.12798117943938 20.975569502136988 47 23.736836374307668 26.28022928036649 27.270720854230014 22.71221349109583 48 24.85799373331582 23.43009404909147 28.74325003308149 22.96866218451122 49 22.21186509783088 23.196008931758378 30.128033914509615 24.464092055901126 50 20.734794843486707 30.800601375115782 25.985401174722515 22.479202606674992 51 20.757549049718918 31.670730034038534 23.782588930615784 23.789131985626764 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 420.0 1 1355.5 2 2291.0 3 5874.0 4 9457.0 5 7130.0 6 4803.0 7 5036.5 8 5270.0 9 5704.5 10 6139.0 11 6371.5 12 6604.0 13 6494.5 14 6385.0 15 6198.5 16 6012.0 17 5941.0 18 5870.0 19 5770.0 20 5670.0 21 6572.0 22 7474.0 23 7561.0 24 7648.0 25 8268.5 26 11950.5 27 15012.0 28 16107.5 29 17203.0 30 20615.0 31 24027.0 32 29413.0 33 34799.0 34 39480.5 35 44162.0 36 47026.5 37 49891.0 38 61369.0 39 72847.0 40 97434.0 41 122021.0 42 147658.0 43 173295.0 44 177179.0 45 181063.0 46 173615.0 47 166167.0 48 160768.5 49 155370.0 50 157651.5 51 159933.0 52 154176.5 53 148420.0 54 132638.0 55 116856.0 56 110222.0 57 103588.0 58 96436.0 59 89284.0 60 83249.5 61 77215.0 62 69843.0 63 62471.0 64 53795.0 65 45119.0 66 39710.0 67 34301.0 68 29945.0 69 25589.0 70 21658.0 71 17727.0 72 14833.0 73 11939.0 74 9787.5 75 6166.0 76 4696.0 77 3212.5 78 1729.0 79 1438.5 80 1148.0 81 1011.0 82 874.0 83 654.0 84 434.0 85 288.0 86 142.0 87 90.0 88 38.0 89 32.0 90 26.0 91 18.0 92 10.0 93 7.5 94 5.0 95 3.5 96 2.0 97 2.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2047973.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.353913125195145 #Duplication Level Percentage of deduplicated Percentage of total 1 80.23396055744779 13.923731812042824 2 7.23343765313761 2.5105689725813107 3 2.1037930420051567 1.0952712505304254 4 1.1246948013403875 0.7807142349927878 5 0.6368877330718314 0.5526247195115518 6 0.48082503617548855 0.5006517543724944 7 0.3690395764175964 0.4482996524236848 8 0.28953863476534575 0.40197026512843337 9 0.251577626634887 0.3929270649178147 >10 3.469657582738353 15.458593632092732 >50 2.40970781126007 31.190759192876712 >100 1.392065070905005 31.733438689111054 >500 0.0039651904357352035 0.4121813063761544 >1k 5.664557765336005E-4 0.2857154703034326 >5k 2.832278882668003E-4 0.3125519827386079 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 6359 0.31050214040907764 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4640 0.22656548694733766 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03774463823497673 0.0 2 0.0 0.0 0.0 0.13095875775706028 0.0 3 0.0 0.0 0.0 0.19765885585405668 0.0 4 0.0 0.0 0.0 0.3251019422619341 0.0 5 0.0 0.0 0.0 0.5364328533628129 0.0 6 0.0 0.0 0.0 0.806504773256288 0.0 7 0.0 0.0 0.0 0.9448366750928845 0.0 8 0.0 0.0 0.0 1.3227225163612997 0.0 9 0.0 0.0 0.0 1.487617268391722 0.0 10 0.0 0.0 0.0 1.7429429001261247 0.0 11 0.0 0.0 0.0 2.0392846976009937 0.0 12 0.0 0.0 0.0 2.2765925136708347 0.0 13 0.0 0.0 0.0 2.3835763459772177 0.0 14 0.0 0.0 0.0 2.4251784569425476 0.0 15 0.0 0.0 0.0 2.4870445069344176 0.0 16 0.0 0.0 0.0 2.6277690184392077 0.0 17 0.0 0.0 0.0 2.7788452289165924 0.0 18 0.0 0.0 0.0 2.981191646569559 0.0 19 0.0 0.0 0.0 3.0857828692077485 0.0 20 0.0 0.0 0.0 3.197014804394394 0.0 21 0.0 0.0 0.0 3.341547959860799 0.0 22 0.0 0.0 0.0 3.486032286558465 0.0 23 0.0 0.0 0.0 3.6549798263941957 0.0 24 0.0 0.0 0.0 3.7819346251146864 0.0 25 0.0 0.0 0.0 3.890822779401877 0.0 26 0.0 0.0 0.0 3.999271474770419 0.0 27 0.0 0.0 0.0 4.109819807194723 0.0 28 0.0 0.0 0.0 4.2196357080879485 0.0 29 0.0 0.0 0.0 4.338289616122869 0.0 30 0.0 0.0 0.0 4.486436100475934 0.0 31 0.0 0.0 0.0 4.626672324293338 0.0 32 0.0 0.0 0.0 4.755824417607068 0.0 33 0.0 0.0 0.0 4.884244079389719 0.0 34 0.0 0.0 0.0 5.031316330830533 0.0 35 0.0 0.0 0.0 5.200898644659866 0.0 36 0.0 0.0 0.0 5.343771621989157 0.0 37 0.0 0.0 0.0 5.49704512705978 0.0 38 0.0 0.0 0.0 5.6587171803534515 0.0 39 0.0 0.0 0.0 5.889433112643575 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCCGTA 35 1.2125565E-7 45.000004 33 ACGCGAT 25 3.891878E-5 45.0 11 GAATCGT 20 7.034581E-4 45.0 9 ATTCGAC 25 3.891878E-5 45.0 11 TAACGCG 20 7.034581E-4 45.0 1 TTAACGC 20 7.034581E-4 45.0 27 ACTCGAT 25 3.891878E-5 45.0 14 TCGAATA 20 7.034581E-4 45.0 41 AAGTACG 110 0.0 40.909092 1 CACGACC 305 0.0 39.836067 27 CGTTAGG 345 0.0 39.782608 2 CGTTGAT 170 0.0 39.705883 25 GACGGGT 240 0.0 39.375004 4 AAATCCG 40 3.4599907E-7 39.375 42 CGACCGA 40 3.4599907E-7 39.375 34 CGTTTTT 4730 0.0 39.24419 1 AACACGT 305 0.0 38.360657 41 GCGAGAC 300 0.0 38.25 21 CGGTCTA 130 0.0 38.07692 31 TAGCGGG 1485 0.0 37.878788 3 >>END_MODULE