SRR1545336_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545336_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	598159
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2487	0.41577573855780825	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	896	0.14979294802886858	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	664	0.1110072739856794	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCACTA	50	2.1827873E-11	45.0	8
CCGTAGG	20	7.0305704E-4	45.0	2
GTTGATC	100	0.0	42.75	16
CGTTTTT	2420	0.0	42.303722	1
GCGATAT	75	0.0	42.0	9
TACGAAT	120	0.0	41.249996	12
CGAATAT	115	0.0	41.08696	14
CGAATGG	50	1.0804797E-9	40.5	2
TATAGCG	45	1.9255822E-8	40.0	1
TGCGTAG	45	1.9255822E-8	40.0	1
CTTACGG	45	1.9255822E-8	40.0	2
GGATGCC	330	0.0	39.545456	8
CGAGGGT	80	0.0	39.375	4
GTCCACG	40	3.4545155E-7	39.375	40
AACGGGA	155	0.0	39.193546	4
CACGTGA	230	0.0	39.130436	43
CGTTAGG	110	0.0	38.863636	2
AGGGCGA	715	0.0	38.70629	6
ACGACCA	250	0.0	38.7	28
TGTACGG	70	0.0	38.571426	2