##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545331_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3763537 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.262211318767424 31.0 31.0 33.0 30.0 34.0 2 31.63625015510675 31.0 31.0 34.0 30.0 34.0 3 31.827800018971516 31.0 31.0 34.0 30.0 34.0 4 35.621745979911985 37.0 35.0 37.0 33.0 37.0 5 35.54187324317524 37.0 35.0 37.0 33.0 37.0 6 35.60035546349086 37.0 35.0 37.0 33.0 37.0 7 35.861194934445976 37.0 35.0 37.0 35.0 37.0 8 35.89577118545666 37.0 35.0 37.0 35.0 37.0 9 37.82306829984666 39.0 37.0 39.0 35.0 39.0 10 37.2407538440568 39.0 37.0 39.0 34.0 39.0 11 36.85982255521867 39.0 35.0 39.0 33.0 39.0 12 36.007633245003305 37.0 35.0 39.0 32.0 39.0 13 35.624077563207166 37.0 35.0 39.0 31.0 39.0 14 36.56691139212926 38.0 35.0 41.0 31.0 41.0 15 36.84243306230283 38.0 35.0 41.0 32.0 41.0 16 36.96876023804203 38.0 35.0 41.0 32.0 41.0 17 36.9175230640751 38.0 35.0 41.0 32.0 41.0 18 36.879343819391174 38.0 35.0 40.0 32.0 41.0 19 36.83119390084381 38.0 35.0 40.0 32.0 41.0 20 36.681374728081586 38.0 35.0 40.0 32.0 41.0 21 36.55426185527072 38.0 35.0 40.0 31.0 41.0 22 36.43752034323032 38.0 35.0 40.0 31.0 41.0 23 36.365466581038 38.0 35.0 40.0 31.0 41.0 24 36.24099510646501 37.0 35.0 40.0 31.0 41.0 25 36.10812249221942 37.0 35.0 40.0 31.0 41.0 26 35.950501084485154 37.0 35.0 40.0 30.0 41.0 27 35.803828951329564 37.0 34.0 40.0 30.0 41.0 28 35.72964766920054 37.0 34.0 40.0 30.0 41.0 29 35.86044590500904 37.0 35.0 40.0 30.0 41.0 30 35.86523342270848 37.0 35.0 40.0 30.0 41.0 31 35.7375835550441 37.0 34.0 40.0 30.0 41.0 32 35.60273434272069 37.0 34.0 40.0 30.0 41.0 33 35.414390505527116 37.0 34.0 40.0 29.0 41.0 34 35.28075929637466 36.0 34.0 40.0 29.0 41.0 35 35.13202819581686 36.0 34.0 40.0 28.0 41.0 36 34.95196008435682 36.0 34.0 40.0 27.0 41.0 37 34.82876878850932 36.0 34.0 40.0 26.0 41.0 38 34.77629634038406 36.0 34.0 40.0 27.0 41.0 39 34.71226535038715 36.0 34.0 40.0 26.0 41.0 40 34.53886437146758 36.0 33.0 40.0 25.0 41.0 41 34.485675310220145 35.0 33.0 40.0 25.0 41.0 42 34.43434673287389 35.0 33.0 40.0 25.0 41.0 43 34.300658928024355 35.0 33.0 40.0 25.0 41.0 44 34.17843002473471 35.0 33.0 40.0 24.0 41.0 45 34.14243675563705 35.0 33.0 40.0 24.0 41.0 46 34.18222113931655 35.0 33.0 40.0 24.0 41.0 47 34.15353243504714 35.0 33.0 40.0 25.0 41.0 48 34.077991793358215 35.0 33.0 39.0 24.0 41.0 49 34.05302644825865 35.0 33.0 39.0 24.0 41.0 50 33.903658446828075 35.0 33.0 39.0 24.0 41.0 51 33.66597432149597 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 5.0 11 5.0 12 13.0 13 24.0 14 48.0 15 115.0 16 306.0 17 760.0 18 1651.0 19 3473.0 20 5980.0 21 9525.0 22 14296.0 23 21080.0 24 29832.0 25 41046.0 26 53912.0 27 64894.0 28 74364.0 29 86273.0 30 102759.0 31 126905.0 32 159824.0 33 211557.0 34 379116.0 35 560969.0 36 278713.0 37 343564.0 38 471874.0 39 720214.0 40 439.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.257906857299396 23.84095068017134 28.731058044600065 13.170084417929198 2 30.80344367545742 25.92526657769008 29.541811333328194 13.729478413524298 3 29.35666634870336 25.863383301399722 30.489563408038766 14.290386941858152 4 25.995200791170646 28.734857661821845 29.787165637005824 15.482775910001681 5 23.973060448190093 32.55108160222684 28.838908718049005 14.63694923153406 6 22.465887807134617 41.105454788939234 25.620500077453734 10.808157326472411 7 88.37362300410491 4.290432112132816 5.551825317513817 1.784119566248452 8 90.17185163849857 2.8931295215112804 5.019108354720573 1.9159104852695747 9 86.02774464552893 4.293354894611107 6.976469209682275 2.702431250177692 10 54.13883269913382 21.475516249740604 12.03747963684162 12.348171414283957 11 45.96830056407045 21.368382986536336 17.96583904980873 14.697477399584486 12 39.841245084079155 21.750789217696013 22.761487398689052 15.646478299535783 13 22.936163507891646 36.819008289276816 23.83130549799298 16.41352270483856 14 18.772553584566857 37.83082244176157 27.313508542628917 16.08311543104266 15 17.789249846620347 22.134072283599178 43.927826403726066 16.148851466054406 16 19.109470692064406 17.648345160416916 42.509586062260055 20.732598085258626 17 19.54900403529977 18.83534026635051 27.69017549183122 33.92548020651849 18 23.896270981260447 22.32200719695329 31.28870527910314 22.49301654268312 19 30.76116961252141 23.813742232373432 22.91610259179065 22.50898556331451 20 32.7093635588012 22.74631550055174 23.082355773305803 21.461965167341255 21 25.57790716552009 26.696270024713453 25.424142236412184 22.30168057335427 22 25.754815217706113 23.730868063738978 23.551276365822897 26.963040352732015 23 23.643025164891434 29.090294581931836 23.174742270369602 24.091937982807128 24 22.86179197919404 23.548167588095986 34.359938536541556 19.23010189616842 25 20.811911773419524 24.501712086263534 31.519737948637143 23.166638191679795 26 19.932898228448398 31.942106587500003 25.03456190280579 23.090433281245808 27 21.873997784530882 29.562935079421298 26.952890326307404 21.610176809740413 28 18.633641704598627 27.477078078414003 34.18489043684173 19.704389780145647 29 19.68005097332642 24.007310144685704 33.381683241057544 22.93095564093033 30 21.98599349494903 27.664083015525026 28.524603318633506 21.825320170892436 31 28.41481298044898 25.890830885945853 23.47671884187667 22.217637291728497 32 30.53959612991715 25.683127334738572 23.97159905695095 19.80567747839333 33 27.603023432478548 26.210742713569708 24.52065703087282 21.66557682307893 34 21.50819827199786 25.90403654859777 27.87651616019718 24.711249019207198 35 22.764038190670107 25.449171882726272 28.754892007173037 23.031897919430577 36 30.365903138457256 25.243434567004392 23.946064566390604 20.444597728147752 37 23.335654731174422 30.074926857368478 26.14014423134408 20.449274180113015 38 23.43835067916165 30.324373056515718 22.961963705950016 23.275312558372615 39 23.76099929401518 29.68505424551426 24.04825567013158 22.50569079033898 40 25.361116417880307 25.2395286667834 23.896536688758474 25.502818226577816 41 19.673062866128326 23.819587797330012 25.54995473672771 30.957394599813952 42 23.84145552441759 26.471534622882675 22.9005852739059 26.786424578793834 43 23.195945728712115 26.44677068406661 24.978444479222603 25.378839107998672 44 22.966374450417256 28.861892416628294 25.93857852334121 22.233154609613244 45 20.151814636072395 31.700605042543756 22.9467386663131 25.20084165507075 46 22.90728110285617 29.625695190455147 25.317380963705155 22.149642742983527 47 23.802476234457107 25.419306359948102 26.80752175413713 23.970695651457657 48 24.65723068485842 22.321316357458425 28.764563760101204 24.256889197581955 49 22.07131217256533 23.12492211448964 29.60119695913711 25.20256875380792 50 20.88458277412976 30.207833747881313 25.804289953838637 23.10329352415029 51 20.22605331102099 31.159119732315638 23.474035196146602 25.140791760516766 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1494.0 1 3280.0 2 5066.0 3 12967.0 4 20868.0 5 15579.0 6 10290.0 7 10649.0 8 11008.0 9 11615.5 10 12223.0 11 12096.5 12 11970.0 13 12352.5 14 12735.0 15 12324.0 16 11913.0 17 11218.5 18 10524.0 19 10354.5 20 10185.0 21 10034.5 22 9884.0 23 10177.0 24 10470.0 25 12816.5 26 16353.0 27 17543.0 28 23064.5 29 28586.0 30 33015.5 31 37445.0 32 45317.5 33 53190.0 34 60904.5 35 68619.0 36 72087.0 37 75555.0 38 93600.0 39 111645.0 40 167503.5 41 223362.0 42 266089.0 43 308816.0 44 324899.5 45 340983.0 46 331094.0 47 321205.0 48 302291.0 49 283377.0 50 274678.5 51 265980.0 52 254577.0 53 243174.0 54 222735.5 55 202297.0 56 198465.5 57 194634.0 58 189731.0 59 184828.0 60 176872.0 61 168916.0 62 150856.0 63 132796.0 64 118338.5 65 103881.0 66 90756.5 67 77632.0 68 67803.5 69 57975.0 70 48298.5 71 38622.0 72 33180.5 73 27739.0 74 23575.5 75 15016.5 76 10621.0 77 7925.5 78 5230.0 79 3989.5 80 2749.0 81 2301.5 82 1854.0 83 1285.0 84 716.0 85 468.0 86 220.0 87 151.5 88 83.0 89 53.5 90 24.0 91 24.0 92 24.0 93 15.5 94 7.0 95 5.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3763537.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.69215709925148 #Duplication Level Percentage of deduplicated Percentage of total 1 79.91723966955458 12.54073879833183 2 8.332637446575571 2.615141117255391 3 2.715086800729773 1.278167058454671 4 1.2678902171689381 0.7958372988967619 5 0.722559413653364 0.5669257916295811 6 0.49894998744771346 0.4697760952619444 7 0.34513523337539354 0.37911414118294484 8 0.2852132501286772 0.35804889022458486 9 0.21600478790651093 0.30506229594175194 >10 2.3185633989122327 8.577317577989964 >50 1.2279506472509925 14.298626538362674 >100 2.140433371442998 55.86637499137903 >500 0.009937152770766898 0.9928512065518579 >1k 0.002055962642227634 0.4459482510513598 >5k 1.7133022018563616E-4 0.21403472759509706 >10k+ 1.7133022018563616E-4 0.2960352198906687 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11011 0.29257052607693246 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 7961 0.2115297391788629 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.051361259368514246 0.0 2 0.0 0.0 0.0 0.13144549927368857 0.0 3 0.0 0.0 0.0 0.1933287755640505 0.0 4 0.0 0.0 0.0 0.34098243221735297 0.0 5 0.0 0.0 0.0 0.5517416196519391 0.0 6 0.0 0.0 0.0 1.00397578129297 0.0 7 0.0 0.0 0.0 1.2265589523897333 0.0 8 0.0 0.0 0.0 1.7663703053802846 0.0 9 0.0 0.0 0.0 2.0055601951037016 0.0 10 0.0 0.0 0.0 2.3021694751506363 0.0 11 0.0 0.0 0.0 2.653886490288258 0.0 12 0.0 0.0 0.0 2.9348987402010396 0.0 13 0.0 0.0 0.0 3.083987217343685 0.0 14 0.0 0.0 0.0 3.148793276112338 0.0 15 0.0 0.0 0.0 3.2163361221106634 0.0 16 0.0 0.0 0.0 3.3572673790638965 0.0 17 0.0 0.0 0.0 3.5018122579902893 0.0 18 0.0 0.0 0.0 3.6950878920547345 0.0 19 0.0 0.0 0.0 3.8028057117546608 0.0 20 0.0 0.0 0.0 3.904199693001557 0.0 21 0.0 0.0 0.0 4.046698624193146 0.0 22 0.0 0.0 0.0 4.1938208658503955 0.0 23 0.0 0.0 0.0 4.3691081022984495 0.0 24 0.0 0.0 0.0 4.501988422061481 0.0 25 0.0 0.0 0.0 4.612230462992658 0.0 26 0.0 0.0 0.0 4.723296197167717 0.0 27 0.0 0.0 0.0 4.826948692147838 0.0 28 2.6570749802645755E-5 0.0 0.0 4.937669006575463 0.0 29 2.6570749802645755E-5 0.0 0.0 5.059814743418226 0.0 30 2.6570749802645755E-5 0.0 0.0 5.208664083812647 0.0 31 2.6570749802645755E-5 0.0 0.0 5.352438410994764 0.0 32 2.6570749802645755E-5 0.0 0.0 5.48577043350444 0.0 33 2.6570749802645755E-5 0.0 0.0 5.623247492983329 0.0 34 2.6570749802645755E-5 0.0 0.0 5.75562296850011 0.0 35 2.6570749802645755E-5 0.0 0.0 5.92554291348803 0.0 36 2.6570749802645755E-5 0.0 0.0 6.074126546384425 0.0 37 2.6570749802645755E-5 0.0 0.0 6.222550754782004 0.0 38 2.6570749802645755E-5 0.0 0.0 6.378547626873337 0.0 39 2.6570749802645755E-5 0.0 0.0 6.555960523305603 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTACG 95 0.0 45.000004 1 ACGTTAC 25 3.8925038E-5 45.0 28 CCGTCGA 20 7.0353353E-4 45.0 35 ATACCCG 20 7.0353353E-4 45.0 29 CGGACTA 20 7.0353353E-4 45.0 14 CGCATAT 30 2.1668238E-6 44.999996 29 CTATACG 105 0.0 42.857143 1 CGTTGAT 830 0.0 42.01807 25 CATACGT 55 6.184564E-11 40.909092 39 TACGAAC 50 1.0822987E-9 40.5 34 TAATCGT 870 0.0 40.344826 21 TTATACG 140 0.0 40.178574 1 TTAATCG 880 0.0 40.142044 20 GTCGATA 85 0.0 39.705883 9 CACGACC 1310 0.0 39.67557 27 AATCGTT 890 0.0 39.4382 22 GCGATAT 560 0.0 39.375004 9 CGTAATT 80 0.0 39.375 15 CGTTTTT 9105 0.0 38.82208 1 TCGTTGA 905 0.0 38.53591 24 >>END_MODULE