SRR1545324_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545324_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3121631
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	6308	0.20207385177812495	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4138	0.13255890910873194	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3924	0.1257035184491697	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3755	0.12028968190026304	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATTA	50	2.1827873E-11	45.0	26
CTATCGT	20	7.03515E-4	45.0	13
ACGCACT	20	7.03515E-4	45.0	11
CACGCGA	50	2.1827873E-11	45.0	13
ACCGAAT	20	7.03515E-4	45.0	13
CCCCGTT	35	1.2128294E-7	45.0	42
TACGATA	90	0.0	45.0	13
TATTACG	45	3.8562575E-10	45.0	1
AACGACA	20	7.03515E-4	45.0	37
GTATCGC	50	2.1827873E-11	45.0	22
TACTCGA	35	1.2128294E-7	45.0	45
TCATACG	40	6.8212103E-9	45.0	1
ATACGAG	105	0.0	45.0	1
GCCGTAT	25	3.89235E-5	45.0	9
TCGAACA	25	3.89235E-5	45.0	1
AATCGTC	45	3.8562575E-10	45.0	42
ATCGACT	45	3.8562575E-10	45.0	28
TACGTCG	25	3.89235E-5	45.0	44
TACGTCA	40	6.8212103E-9	45.0	41
TAGTACT	25	3.89235E-5	45.0	24