SRR1545314_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545314_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1854110
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2753	0.14848094233891193	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2321	0.12518135385710666	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1977	0.10662797784381725	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	35	1.2124656E-7	45.0	1
GTACCGA	35	1.2124656E-7	45.0	20
CGTATAT	20	7.034407E-4	45.0	14
GTCGAAC	20	7.034407E-4	45.0	27
CGCCTAT	20	7.034407E-4	45.0	44
TATTACG	35	1.2124656E-7	45.0	1
GACGATT	20	7.034407E-4	45.0	24
TATACGT	20	7.034407E-4	45.0	11
GCTCGAT	20	7.034407E-4	45.0	43
TCGACTA	40	6.8193913E-9	45.0	35
TAATGCG	45	3.8562575E-10	45.0	1
TGCGTTA	35	1.2124656E-7	45.0	21
TAGTACG	40	6.8193913E-9	45.0	1
AGTCGAC	20	7.034407E-4	45.0	18
AAGTCGA	20	7.034407E-4	45.0	25
TACCCGA	30	2.1662254E-6	44.999996	40
CGGTCTA	65	0.0	44.999996	31
GCTACGC	30	2.1662254E-6	44.999996	41
TATAGCG	160	0.0	43.59375	1
CGTATTT	380	0.0	43.223682	1