SRR1545312_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545312_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2978412
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3946	0.13248670768181164	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3708	0.12449587229704957	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3309	0.11109947179906608	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTACGG	105	0.0	45.000004	2
CGGTATG	20	7.035096E-4	45.000004	24
CACGATA	35	1.212793E-7	45.0	13
AACGCAC	35	1.212793E-7	45.0	40
TTACGAG	55	1.8189894E-12	45.0	1
TAAATCG	35	1.212793E-7	45.0	1
CGCGTAA	35	1.212793E-7	45.0	31
TCGTAAG	155	0.0	43.548386	1
GTCGATG	105	0.0	42.857147	1
GTTTACG	150	0.0	42.0	1
TTAAACG	60	3.6379788E-12	41.249996	1
TATCGTG	60	3.6379788E-12	41.249996	1
CGTAACG	55	6.184564E-11	40.909092	41
TCGGTAC	150	0.0	40.5	36
TCTCAAC	670	0.0	40.298508	35
CGGGTAT	330	0.0	40.227272	6
TTAGTAG	500	0.0	40.05	1
ACGCATT	45	1.9301297E-8	40.0	9
CTATACG	45	1.9301297E-8	40.0	1
TATCGTT	45	1.9301297E-8	40.0	23