SRR1545307_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545307_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2076598
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2326	0.11201012425129948	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2129	0.10252345422657637	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACG	40	6.8193913E-9	45.000004	1
CCACTAG	40	6.8193913E-9	45.000004	1
CTACGAT	20	7.0346013E-4	45.000004	19
CGCTAAC	40	6.8193913E-9	45.000004	37
CGTTTAG	20	7.0346013E-4	45.000004	30
TGGTCGA	20	7.0346013E-4	45.000004	26
TACGTCT	20	7.0346013E-4	45.000004	36
TACGTCG	20	7.0346013E-4	45.000004	37
ACTATCG	25	3.891898E-5	45.0	11
CGAACTA	25	3.891898E-5	45.0	28
CGCATTG	25	3.891898E-5	45.0	39
GTTAGTA	25	3.891898E-5	45.0	22
CATTCGA	25	3.891898E-5	45.0	31
GTGTCGA	45	3.8562575E-10	45.0	14
GTACTCG	25	3.891898E-5	45.0	1
ACTCGTT	25	3.891898E-5	45.0	32
CATCGTA	35	1.2125565E-7	45.0	18
ACCGTAT	25	3.891898E-5	45.0	6
ATACGTC	35	1.2125565E-7	45.0	37
GCTCGAT	25	3.891898E-5	45.0	19