SRR1545299_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545299_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3063822
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3415	0.11146208885503141	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3124	0.10196414804776517	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGGTC	30	2.166691E-6	45.000004	26
CGAAACG	30	2.166691E-6	45.000004	24
TACCGTA	30	2.166691E-6	45.000004	45
TACCGGA	30	2.166691E-6	45.000004	31
AAATGCG	110	0.0	45.000004	1
CGGACGT	30	2.166691E-6	45.000004	26
AACGTCC	45	3.8562575E-10	45.0	33
TCGTTAC	35	1.2128112E-7	45.0	42
CGTATTA	25	3.8923332E-5	45.0	31
GTCGAAT	35	1.2128112E-7	45.0	11
GTCGAAC	20	7.03513E-4	45.0	14
CGACGGA	25	3.8923332E-5	45.0	31
TCCGATC	40	6.8212103E-9	45.0	19
CGTGCAA	25	3.8923332E-5	45.0	29
ACCGCGA	20	7.03513E-4	45.0	37
TATATCG	35	1.2128112E-7	45.0	1
ACCTATC	20	7.03513E-4	45.0	24
GCCGAAT	20	7.03513E-4	45.0	14
GTACTCG	35	1.2128112E-7	45.0	33
CATACGT	35	1.2128112E-7	45.0	10