SRR1545298_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545298_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2155034
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2944	0.13661037366463824	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2275	0.10556677992087364	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2207	0.10241137726829369	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGCC	30	2.166389E-6	45.000004	18
CCGTGAT	30	2.166389E-6	45.000004	30
ATTAACG	60	0.0	45.000004	1
CATACGT	30	2.166389E-6	45.000004	37
CTTTCGT	45	3.8562575E-10	45.000004	22
ACGTAAG	135	0.0	45.000004	1
CGACTTA	30	2.166389E-6	45.000004	32
TAGTCGA	45	3.8562575E-10	45.000004	21
TCGTTAC	25	3.891947E-5	45.0	26
ACGCCTA	40	6.8193913E-9	45.0	1
CGTATCG	40	6.8193913E-9	45.0	40
CGAGTCA	25	3.891947E-5	45.0	45
GCGAATC	20	7.034663E-4	45.0	12
GACGTAA	25	3.891947E-5	45.0	27
ATTACGT	25	3.891947E-5	45.0	12
TAAACCG	25	3.891947E-5	45.0	32
GTAGGTT	25	3.891947E-5	45.0	32
CGCGATA	25	3.891947E-5	45.0	11
TCTAGAT	25	3.891947E-5	45.0	44
TACGATG	20	7.034663E-4	45.0	16