SRR1545294_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545294_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3224720
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5417	0.1679835768686894	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4088	0.1267706963705376	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3973	0.12320449527400829	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTCTCG	25	3.892379E-5	45.0	27
CCGTAAA	25	3.892379E-5	45.0	28
AATCTCG	45	3.8562575E-10	45.0	18
TCGACTA	45	3.8562575E-10	45.0	14
GTACGAT	20	7.0351845E-4	45.0	20
ATTACGC	30	2.1667274E-6	44.999996	22
CAATCGT	30	2.1667274E-6	44.999996	20
TCGAACG	100	0.0	40.5	1
GACTAAT	740	0.0	40.43919	9
TAGGGTA	1170	0.0	40.384613	5
GGACTAA	890	0.0	40.19663	8
ATTACGG	185	0.0	40.135136	2
TCGTTAG	45	1.9301297E-8	40.0	1
CGGTGAT	45	1.9301297E-8	40.0	41
ACGGTAC	45	1.9301297E-8	40.0	13
GGCGATT	1585	0.0	39.463722	8
AGTACGG	400	0.0	38.8125	2
GTAGGGT	665	0.0	38.57143	4
TACGCCC	35	6.2517993E-6	38.57143	25
ACGTAGG	280	0.0	38.57143	2