SRR1545291_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545291_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2406996
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3074	0.12771105560624113	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2707	0.1124638345888402	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2441	0.10141271526832617	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCTCGA	60	0.0	45.000004	38
CATACGT	30	2.1664964E-6	45.000004	24
CTCTACA	30	2.1664964E-6	45.000004	20
TCGTTTG	40	6.8212103E-9	45.0	1
ACTATCG	35	1.2126657E-7	45.0	1
TCGTTGC	45	3.8562575E-10	45.0	30
ATCTCGC	20	7.034827E-4	45.0	40
TCGTTAG	50	2.1827873E-11	45.0	1
CGAACTT	40	6.8212103E-9	45.0	30
CGAAACG	35	1.2126657E-7	45.0	39
CTATCGG	35	1.2126657E-7	45.0	2
AACCCGT	25	3.892083E-5	45.0	22
CGCATCG	35	1.2126657E-7	45.0	21
TAGAACG	85	0.0	45.0	1
ACCGAAT	25	3.892083E-5	45.0	17
TACGGAC	35	1.2126657E-7	45.0	17
TATGCGA	35	1.2126657E-7	45.0	34
ATCGTAC	40	6.8212103E-9	45.0	40
GTGCTTA	40	6.8212103E-9	45.0	30
CTACGTC	20	7.034827E-4	45.0	21