SRR1545287_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545287_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1740313
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2251	0.1293445489403343	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2102	0.12078287066751786	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1801	0.10348713133786853	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTA	25	3.8916347E-5	45.000004	38
CTATCGA	25	3.8916347E-5	45.000004	25
CGCATTA	50	2.1827873E-11	45.000004	23
GACCGTT	25	3.8916347E-5	45.000004	34
TAGCGAT	35	1.212411E-7	45.000004	24
TATGCGT	30	2.1661472E-6	45.000004	20
TCTAGCG	35	1.212411E-7	45.000004	1
GCCGATC	35	1.212411E-7	45.000004	9
TTAACGA	25	3.8916347E-5	45.000004	23
TATAGCG	60	0.0	45.000004	1
CGTCGCA	30	2.1661472E-6	45.000004	32
CCGAATA	25	3.8916347E-5	45.000004	22
AACGTAT	20	7.034289E-4	45.0	40
ACCGGGT	40	6.8193913E-9	45.0	4
CATGCGA	20	7.034289E-4	45.0	28
TCCGATT	20	7.034289E-4	45.0	26
CATTCGA	20	7.034289E-4	45.0	28
CCCAACG	20	7.034289E-4	45.0	23
CTACGTC	20	7.034289E-4	45.0	30
AGTTATC	20	7.034289E-4	45.0	21