SRR1545285_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545285_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3160799
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5966	0.1887497433402124	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3481	0.1101303815902245	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3208	0.10149332494726808	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTA	20	7.035162E-4	45.000004	26
ATCTCGC	20	7.035162E-4	45.000004	13
CGTATCA	20	7.035162E-4	45.000004	30
CCGTATC	20	7.035162E-4	45.000004	29
CGTACGT	20	7.035162E-4	45.000004	13
TCCGTCG	40	6.8212103E-9	45.000004	12
CGACTTA	60	0.0	45.000004	38
TAGTCCG	35	1.2128294E-7	45.000004	40
TACCGAA	20	7.035162E-4	45.000004	25
CTATACG	45	3.8562575E-10	45.0	1
TTATCCG	25	3.892361E-5	45.0	1
CGCTAAG	50	2.1827873E-11	45.0	22
GTCGTAC	25	3.892361E-5	45.0	20
CGACTAT	25	3.892361E-5	45.0	34
CGATATC	25	3.892361E-5	45.0	10
TCGCGAC	25	3.892361E-5	45.0	38
ACGACAC	25	3.892361E-5	45.0	15
ACGGTAC	25	3.892361E-5	45.0	13
GCGATAT	250	0.0	43.2	9
TCATGCA	960	0.0	42.42188	24