##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545282_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3477018 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.217394905634656 31.0 31.0 33.0 30.0 34.0 2 31.538036904036733 31.0 31.0 34.0 30.0 34.0 3 31.633512394816478 31.0 31.0 34.0 30.0 34.0 4 30.29944768764499 35.0 33.0 37.0 0.0 37.0 5 32.83189416908397 35.0 33.0 37.0 19.0 37.0 6 34.43402996475716 35.0 33.0 37.0 30.0 37.0 7 35.46025473552337 36.0 35.0 37.0 33.0 37.0 8 35.65109844125052 37.0 35.0 37.0 35.0 37.0 9 37.657543906876526 39.0 37.0 39.0 35.0 39.0 10 37.078701059356035 39.0 37.0 39.0 33.0 39.0 11 36.633091056761856 39.0 35.0 39.0 32.0 39.0 12 35.62871949469344 37.0 35.0 39.0 31.0 39.0 13 35.20395781672686 37.0 35.0 39.0 30.0 39.0 14 35.9567764676513 38.0 35.0 40.0 30.0 41.0 15 36.25473552337089 38.0 35.0 40.0 30.0 41.0 16 36.42114104672452 38.0 35.0 40.0 31.0 41.0 17 36.35639217283316 38.0 35.0 40.0 31.0 41.0 18 36.32940352911604 38.0 35.0 40.0 31.0 41.0 19 36.33461345325218 37.0 35.0 40.0 31.0 41.0 20 36.2288466726373 37.0 35.0 40.0 30.0 41.0 21 36.082646969328316 37.0 34.0 40.0 30.0 41.0 22 36.00290593836443 37.0 34.0 40.0 30.0 41.0 23 35.938858240020615 37.0 34.0 40.0 30.0 41.0 24 35.87918095333415 37.0 34.0 40.0 30.0 41.0 25 35.757270741767805 37.0 34.0 40.0 30.0 41.0 26 35.6090471777828 36.0 34.0 40.0 30.0 41.0 27 35.61192895751474 37.0 34.0 40.0 30.0 41.0 28 35.61742188277426 36.0 34.0 40.0 29.0 41.0 29 35.626831094920995 36.0 34.0 40.0 30.0 41.0 30 35.551184376957494 36.0 34.0 40.0 29.0 41.0 31 35.43618583510353 36.0 34.0 40.0 29.0 41.0 32 35.36419627393359 36.0 34.0 40.0 29.0 41.0 33 35.22431635384114 36.0 34.0 40.0 29.0 41.0 34 35.0817551131458 36.0 34.0 40.0 27.0 41.0 35 34.96998491235881 36.0 34.0 40.0 27.0 41.0 36 34.82825398085371 36.0 33.0 40.0 27.0 41.0 37 34.77197961011419 36.0 33.0 40.0 27.0 41.0 38 34.72374948878608 35.0 33.0 40.0 27.0 41.0 39 34.650514032426635 35.0 33.0 40.0 26.0 41.0 40 34.50619438840984 35.0 33.0 40.0 26.0 41.0 41 34.45790272008946 35.0 33.0 40.0 26.0 41.0 42 34.422048721059255 35.0 33.0 40.0 26.0 41.0 43 34.332010360602105 35.0 33.0 40.0 26.0 41.0 44 34.27502934986244 35.0 33.0 40.0 26.0 41.0 45 34.20457645028009 35.0 33.0 39.0 26.0 41.0 46 34.13992967537125 35.0 33.0 39.0 26.0 41.0 47 34.0872037475791 35.0 33.0 39.0 25.0 41.0 48 33.97035735794293 35.0 33.0 39.0 25.0 41.0 49 33.917119784827115 35.0 33.0 39.0 24.0 41.0 50 33.80571023791076 35.0 33.0 39.0 24.0 40.0 51 33.71202018511264 35.0 32.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 5.0 11 6.0 12 3.0 13 12.0 14 30.0 15 89.0 16 341.0 17 811.0 18 1855.0 19 3585.0 20 6165.0 21 9998.0 22 15279.0 23 21371.0 24 29742.0 25 39951.0 26 51839.0 27 64051.0 28 76144.0 29 92291.0 30 113504.0 31 141330.0 32 178387.0 33 253233.0 34 370280.0 35 472253.0 36 269413.0 37 337154.0 38 428080.0 39 499561.0 40 254.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.22258268435769 24.924547413904673 30.789803216434315 12.063066685303326 2 28.48906735599298 26.90351329788917 31.10383667844112 13.503582667676728 3 28.799707105341415 26.400381016146596 30.841226591291733 13.958685287220257 4 23.063584945490646 38.7847575134785 25.843553297682092 12.308104243348755 5 24.117994212281904 32.33256198271047 28.87528911268219 14.674154692325436 6 22.33802068324064 40.89231059488332 25.665498424224438 11.104170297651608 7 89.9557609422787 4.1638553496128 4.1889918315061925 1.6913918766023068 8 92.11255161750672 2.4676892670673545 3.611054069895525 1.8087050455303941 9 87.95531113155009 4.5728840057773645 4.934458205278201 2.5373466573943535 10 57.26478839051165 23.76427156833816 9.176340185756876 9.794599855393328 11 48.51102295127607 20.600439802152305 17.615554478003855 13.272982768567779 12 44.189590045262925 20.277001729643047 20.453589828985642 15.079818396108388 13 24.73708792994457 35.10692208093257 22.025137632304464 18.1308523568184 14 17.74592481258366 37.10193619935243 26.939693726060664 18.212445262003246 15 17.528468359956722 22.478600916072335 42.964517296142844 17.0284134278281 16 21.498968368872408 19.04560171963447 40.046959779903354 19.40847013158977 17 21.42229347101453 20.441855636065156 25.605331925230185 32.53051896769013 18 25.49555394881476 24.60939230110399 28.47759200556339 21.41746174451786 19 33.356053951978396 25.463256158006658 21.23549547342004 19.945194416594912 20 34.53372976498827 25.333259707024812 21.68714685975166 18.44586366823525 21 26.74541805650704 27.05252029181327 24.810973080956153 21.391088570723536 22 25.472315645187916 24.877840724436858 24.09642400470748 25.55341962566774 23 24.640280838350563 28.78943968653599 23.934417365685192 22.635862109428253 24 24.28946298236017 23.10609263455064 32.74486931042635 19.85957507266284 25 22.64141284284407 24.56973187944382 29.781640474682614 23.007214803029495 26 20.324082302708817 33.123181991004934 23.84126282924046 22.71147287704579 27 21.193189106297407 30.838408084168677 27.156402411491687 20.81200039804223 28 18.54517290390789 28.07632862412562 33.78000919178446 19.59848928018204 29 20.493940497288193 25.923765709582174 31.59727674691359 21.98501704621604 30 23.542155950875145 27.920764287098887 27.10929307814915 21.427786683876814 31 31.021438485506835 25.287415825859977 22.41003641626244 21.28110927237075 32 34.07595243970552 25.226185196625384 21.595200254931093 19.102662108738006 33 30.41074276865981 26.347979791879133 22.16824876949156 21.073028669969496 34 22.26571734745118 26.217408135361968 27.23917448802393 24.277700029162922 35 22.929360733824215 25.84792485975051 27.911676039640867 23.311038366784413 36 30.85468640081817 26.569060039378574 23.046990265796726 19.52926329400653 37 24.478533041819166 31.709355545470284 24.54804663076234 19.26406478194821 38 23.713711001783714 32.473084694988636 21.013840020385285 22.799364282842365 39 25.14220518846897 29.832114760406764 23.15331700900024 21.872363042124025 40 27.204978518949286 24.35529525587731 23.611123094559762 24.828603130613647 41 19.986695495968096 23.520729544684553 25.730726731929487 30.76184822741786 42 23.326223792916803 25.329520871045247 22.586308152560612 28.757947183477334 43 22.555563416697872 26.081659629026944 24.913014542921548 26.44976241135364 44 22.509777056086566 28.412076095090676 26.303832767043485 22.77431408177927 45 20.717925532740985 31.709671908514707 22.226488329942494 25.345914228801806 46 21.860024883391457 31.0066269429724 23.971748204927326 23.161599968708817 47 22.82939001178596 25.004961147742115 27.32332705784094 24.84232178263098 48 24.386298834230942 22.576011973478423 29.662630449425343 23.375058742865296 49 22.61555735403153 23.604019306198587 29.725414133605288 24.055009206164595 50 19.880886437746366 30.813185321444987 24.906112076497735 24.399816164310913 51 18.95687626581168 31.885828603705818 24.15167249637477 25.005622634107734 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 503.0 1 1156.0 2 1809.0 3 5684.0 4 9559.0 5 7043.0 6 4527.0 7 4787.5 8 5048.0 9 5375.0 10 5702.0 11 5612.0 12 5522.0 13 5396.5 14 5271.0 15 5372.0 16 5473.0 17 5679.5 18 5886.0 19 5729.0 20 5572.0 21 5698.5 22 5825.0 23 7591.0 24 9357.0 25 10823.0 26 17932.0 27 23575.0 28 28740.0 29 33905.0 30 39898.0 31 45891.0 32 51334.5 33 56778.0 34 62820.0 35 68862.0 36 79966.5 37 91071.0 38 110564.5 39 130058.0 40 179266.0 41 228474.0 42 260609.0 43 292744.0 44 294517.0 45 296290.0 46 278540.5 47 260791.0 48 252295.5 49 243800.0 50 233470.5 51 223141.0 52 215682.0 53 208223.0 54 199067.5 55 189912.0 56 190084.5 57 190257.0 58 195081.5 59 199906.0 60 193540.5 61 187175.0 62 166190.0 63 145205.0 64 121840.5 65 98476.0 66 81994.5 67 65513.0 68 53445.5 69 41378.0 70 35360.0 71 29342.0 72 23756.0 73 18170.0 74 15750.5 75 9417.0 76 5503.0 77 4428.5 78 3354.0 79 2692.5 80 2031.0 81 1385.0 82 739.0 83 541.0 84 343.0 85 358.0 86 373.0 87 206.0 88 39.0 89 25.0 90 11.0 91 10.5 92 10.0 93 6.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3477018.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.42496905468457 #Duplication Level Percentage of deduplicated Percentage of total 1 77.83568028836369 12.784486400866957 2 9.047962578926851 2.972250107336351 3 3.1470643731263697 1.5507130482510276 4 1.592206605455021 1.0460777689305236 5 0.9548779170522236 0.7841920119292217 6 0.6505274095770904 0.6410935542916696 7 0.4575489934606009 0.526065964101471 8 0.36383358721726766 0.4780764328878801 9 0.2677204673740934 0.3957570352732657 >10 2.6679061283672043 10.361380817273519 >50 1.2242330661539633 14.76457745064755 >100 1.7762985209786741 51.83864668243439 >500 0.012038162549511844 1.2433541171836524 >1k 0.0021019013975338142 0.6133286085925619 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4453 0.1280695124385321 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05320651201690644 0.0 2 0.0 0.0 0.0 0.17998181200097324 0.0 3 0.0 0.0 0.0 0.26281140908675193 0.0 4 0.0 0.0 0.0 0.4253644933675926 0.0 5 0.0 0.0 0.0 0.7290154954619159 0.0 6 0.0 0.0 0.0 1.032695257833005 0.0 7 2.8760276765895374E-5 0.0 0.0 1.205630802026334 0.0 8 2.8760276765895374E-5 0.0 0.0 1.619347383303739 0.0 9 2.8760276765895374E-5 0.0 0.0 1.7448572311101065 0.0 10 5.752055353179075E-5 0.0 0.0 1.9582009641595184 0.0 11 5.752055353179075E-5 0.0 0.0 2.2987801616212513 0.0 12 5.752055353179075E-5 0.0 0.0 2.557306289469885 0.0 13 5.752055353179075E-5 0.0 0.0 2.6674006289297325 0.0 14 5.752055353179075E-5 0.0 0.0 2.712065338747168 0.0 15 5.752055353179075E-5 0.0 0.0 2.7775812492198777 0.0 16 5.752055353179075E-5 0.0 0.0 2.9294067502670393 0.0 17 5.752055353179075E-5 0.0 0.0 3.103147582209813 0.0 18 5.752055353179075E-5 0.0 0.0 3.291211031982003 0.0 19 5.752055353179075E-5 0.0 0.0 3.4221278118203586 0.0 20 5.752055353179075E-5 0.0 0.0 3.561327551367292 0.0 21 5.752055353179075E-5 0.0 0.0 3.7500812477818637 0.0 22 5.752055353179075E-5 0.0 0.0 3.9480669930382875 0.0 23 5.752055353179075E-5 0.0 0.0 4.15243751973674 0.0 24 5.752055353179075E-5 0.0 0.0 4.310561521395632 0.0 25 5.752055353179075E-5 0.0 0.0 4.445188376936789 0.0 26 5.752055353179075E-5 0.0 0.0 4.577859533657865 0.0 27 8.628083029768612E-5 0.0 0.0 4.714442088019101 0.0 28 8.628083029768612E-5 0.0 0.0 4.857495704652665 0.0 29 8.628083029768612E-5 0.0 0.0 5.013175082786456 0.0 30 8.628083029768612E-5 0.0 0.0 5.195515237482233 0.0 31 8.628083029768612E-5 0.0 0.0 5.373282508172233 0.0 32 8.628083029768612E-5 0.0 0.0 5.527782714958622 0.0 33 1.150411070635815E-4 0.0 0.0 5.691773813077758 0.0 34 1.150411070635815E-4 0.0 0.0 5.8686495151880145 0.0 35 1.150411070635815E-4 0.0 0.0 6.076615076482204 0.0 36 1.4380138382947687E-4 0.0 0.0 6.261457375256613 0.0 37 1.4380138382947687E-4 0.0 0.0 6.466805751365107 0.0 38 1.4380138382947687E-4 0.0 0.0 6.709024802287478 0.0 39 1.4380138382947687E-4 0.0 0.0 7.096713333091747 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATGCGT 20 7.03526E-4 45.0 22 TTACGAT 20 7.03526E-4 45.0 43 TCGAGTA 20 7.03526E-4 45.0 1 CGTAAGG 455 0.0 41.53846 2 CTAAGCG 185 0.0 41.351353 1 CCCGTAT 60 3.6379788E-12 41.249996 34 ATATGCG 115 0.0 41.08696 1 ACGTAGG 475 0.0 40.263157 2 AATAGCG 265 0.0 39.905655 1 CGTTGAT 645 0.0 39.418606 25 TAAGTCG 40 3.4609184E-7 39.375 1 GTCGGTA 40 3.4609184E-7 39.375 29 CGTTTTT 3775 0.0 39.21854 1 CGACCCG 950 0.0 39.078945 32 ATAGGGC 1980 0.0 38.636364 4 CGCTAAG 35 6.251941E-6 38.571426 30 GCGTAAG 280 0.0 38.571426 1 CTCGACA 65 9.094947E-12 38.076927 31 TACGGGA 875 0.0 37.54286 4 CGAATAA 90 0.0 37.5 12 >>END_MODULE