##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545279_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2283265 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.397906068721763 31.0 31.0 33.0 30.0 34.0 2 31.697855045296976 31.0 31.0 34.0 30.0 34.0 3 31.775305100371618 31.0 31.0 34.0 30.0 34.0 4 30.292321741015606 35.0 33.0 37.0 0.0 37.0 5 32.897135899687505 35.0 33.0 37.0 19.0 37.0 6 34.531657516757804 35.0 33.0 37.0 30.0 37.0 7 35.546550225225715 37.0 35.0 37.0 33.0 37.0 8 35.74431526782919 37.0 35.0 37.0 35.0 37.0 9 37.833523047040096 39.0 38.0 39.0 35.0 39.0 10 37.341779425515654 39.0 37.0 39.0 34.0 39.0 11 36.79234298252722 39.0 35.0 39.0 33.0 39.0 12 34.951750234861045 35.0 35.0 39.0 31.0 39.0 13 34.20857543911898 35.0 33.0 39.0 26.0 39.0 14 34.84168898485283 35.0 33.0 40.0 27.0 41.0 15 35.39590586287619 35.0 33.0 40.0 30.0 41.0 16 35.729224597232474 35.0 34.0 40.0 32.0 41.0 17 35.68749137747918 35.0 34.0 40.0 31.0 41.0 18 35.7024642343311 36.0 35.0 39.0 31.0 41.0 19 35.64120546673295 36.0 34.0 39.0 31.0 41.0 20 35.461676152352005 35.0 34.0 39.0 31.0 41.0 21 35.26032764484193 35.0 34.0 39.0 31.0 41.0 22 35.12433729768555 35.0 34.0 39.0 30.0 41.0 23 35.146530954576015 35.0 34.0 39.0 30.0 41.0 24 35.06782830727051 35.0 34.0 39.0 30.0 41.0 25 34.98736808911799 35.0 34.0 39.0 30.0 41.0 26 34.805630533468516 35.0 34.0 39.0 30.0 41.0 27 34.77340869325286 35.0 34.0 39.0 29.0 41.0 28 34.895806662827134 35.0 34.0 39.0 30.0 41.0 29 35.03677628308584 35.0 34.0 39.0 30.0 41.0 30 35.03266681703613 35.0 34.0 38.0 30.0 41.0 31 34.7825806465741 35.0 34.0 38.0 30.0 41.0 32 34.586230244846746 35.0 34.0 38.0 29.0 41.0 33 34.41800798418055 35.0 33.0 38.0 29.0 41.0 34 34.37033809041 35.0 34.0 38.0 29.0 41.0 35 34.20470116258954 35.0 33.0 38.0 28.0 41.0 36 33.95510551775637 35.0 33.0 38.0 25.0 41.0 37 33.85904746054444 35.0 33.0 38.0 26.0 41.0 38 33.915743463855485 35.0 33.0 38.0 27.0 41.0 39 33.89658186850848 35.0 33.0 38.0 27.0 41.0 40 33.771605573597455 35.0 33.0 38.0 25.0 41.0 41 33.83237863322917 35.0 33.0 38.0 26.0 41.0 42 33.783045332013586 35.0 33.0 38.0 26.0 40.0 43 33.64881956321321 35.0 33.0 38.0 26.0 40.0 44 33.60067885243281 35.0 33.0 37.0 26.0 40.0 45 33.52810339579506 35.0 33.0 37.0 26.0 40.0 46 33.50943013623036 35.0 33.0 37.0 26.0 40.0 47 33.43367414645256 35.0 33.0 37.0 26.0 40.0 48 33.42036206922981 35.0 33.0 37.0 26.0 40.0 49 33.450015657402886 35.0 33.0 37.0 25.0 40.0 50 33.199270343127054 35.0 33.0 36.0 24.0 40.0 51 33.10920370609632 35.0 32.0 36.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 5.0 14 21.0 15 46.0 16 116.0 17 377.0 18 959.0 19 1879.0 20 3629.0 21 6350.0 22 10149.0 23 15113.0 24 20737.0 25 27774.0 26 35296.0 27 42756.0 28 51446.0 29 62452.0 30 76910.0 31 99540.0 32 130679.0 33 205328.0 34 331836.0 35 484218.0 36 123611.0 37 142541.0 38 184833.0 39 224470.0 40 193.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.192787521378378 24.786260026759923 31.401961664546164 12.618990787315532 2 26.331415757697858 27.440091272804512 32.944839955064346 13.283653014433277 3 27.00479357411426 26.761238839994483 31.821404874160468 14.41256271173079 4 20.66037012786514 39.742079872463336 27.17945573553661 12.418094264134911 5 24.72034564538063 32.42151042476454 29.9964743470425 12.861669582812333 6 20.945619540438802 40.238868462486835 27.703617407528252 11.111894589546111 7 88.74747346453434 4.705936455032596 4.897679419603068 1.6489106608299955 8 91.38746488033583 3.116852402152181 3.409284511434284 2.0863982060777 9 89.95355335451644 2.828843782916131 4.589392821245015 2.6282100413224043 10 72.65573641254957 12.662437343015377 7.150505964047099 7.531320280387953 11 68.03428423770347 12.33794588013218 11.598828870061075 8.028941012103282 12 57.14544741849939 20.675217287524664 13.281112792426637 8.898222501549316 13 18.075738033036025 57.94679986773327 14.529281533242965 9.448180565987743 14 10.153179766693748 56.718339745933996 23.31963219337221 9.80884829400004 15 8.64227323591436 19.29876733537281 62.425474047033525 9.633485381679305 16 10.169253240425444 12.779287555320998 58.33694293040887 18.71451627384469 17 11.960460130558651 14.788646959507549 24.232973395554176 49.01791951437963 18 21.81551418692092 21.440831440940933 36.40295804472981 20.340696327408338 19 35.87827080956437 22.585858408901288 20.127098694194498 21.408772087339837 20 38.19587301517783 22.913109078446873 19.837863760886272 19.053154145489025 21 20.600674910709007 32.315609445246174 24.286274260762546 22.797441383282273 22 22.06769691647706 25.38224866583598 21.387092606421067 31.162961811265884 23 18.485721105522135 35.31018081563025 20.21180195903673 25.992296119810888 24 20.175713287769923 21.345047552517997 43.861969591790704 14.617269567921376 25 13.146393432212205 24.367473771112856 41.21956934477601 21.266563451898925 26 12.945978675274223 43.410861200955644 23.723965461740097 19.919194662030034 27 15.518522817106206 39.69823914438315 28.017860388522575 16.765377649988064 28 10.000985430950854 28.99321804521157 47.01780126266553 13.98799526117205 29 10.687546123643116 24.404482177933794 44.23529463290507 20.67267706551802 30 17.606716697361016 34.22414831392764 30.569250612609572 17.599884376101766 31 36.915206951448916 25.278712720599668 19.21835616978318 18.587724158168236 32 39.418201566616226 25.800640749102712 21.38166178695859 13.399495897322474 33 32.92613866546371 27.720479226020633 20.73924840086455 18.614133707651103 34 16.831598609885408 27.599205523668957 27.068649499729553 28.500546366716083 35 19.08963698913617 24.230608361272125 34.37419660004423 22.305558049547468 36 38.49264102064368 20.37231771169794 24.688198697917237 16.446842569741136 37 19.3765506850935 34.56344313953921 29.495262266972954 16.564743908394338 38 19.122440890566796 37.742311996198424 20.019358243567872 23.115888869666904 39 20.95477309904895 34.73503951578113 25.746025975959864 18.564161409210055 40 27.216026173046053 24.391781067900574 21.048586125570182 27.34360663348319 41 14.997383133363845 20.66032633093399 25.53203417036568 38.810256365336485 42 23.04016397571022 23.870159617915572 20.519081227978354 32.57059517839585 43 22.53825114474229 25.259836243274435 23.581625435505735 28.620287176477543 44 19.044219571534622 32.19162033316326 28.1324769573396 20.631683137962522 45 14.613152656393366 44.0886625074181 17.836256413513105 23.461928422675424 46 23.425357985165977 35.86228492969498 23.052295725638505 17.66006135950054 47 21.464262799105665 25.441199335162583 26.230726612986228 26.863811252745517 48 24.436453937672585 19.087928908821358 34.10318119009401 22.372435963412045 49 20.251438181726606 18.7753502112107 36.22579945823196 24.74741214883073 50 18.498028043175015 37.23474936111227 23.439854769376307 20.82736782633641 51 15.884095801407195 39.49607251019921 20.27298627185193 24.34684541654166 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 885.0 1 999.5 2 1114.0 3 2748.5 4 4383.0 5 3400.5 6 2418.0 7 3025.5 8 3633.0 9 4321.0 10 5009.0 11 5353.0 12 5697.0 13 5724.5 14 5752.0 15 5650.0 16 5548.0 17 5367.0 18 5186.0 19 5010.5 20 4835.0 21 4903.5 22 4972.0 23 6147.0 24 7322.0 25 7486.0 26 7744.0 27 7838.0 28 9067.0 29 10296.0 30 13892.5 31 17489.0 32 20618.5 33 23748.0 34 26913.0 35 30078.0 36 35428.0 37 40778.0 38 66652.5 39 92527.0 40 165554.0 41 238581.0 42 287073.5 43 335566.0 44 320592.0 45 305618.0 46 271475.5 47 237333.0 48 212127.5 49 186922.0 50 177132.0 51 167342.0 52 149252.5 53 131163.0 54 113744.5 55 96326.0 56 87434.5 57 78543.0 58 69358.5 59 60174.0 60 55570.0 61 50966.0 62 45153.0 63 39340.0 64 32897.5 65 26455.0 66 21336.5 67 16218.0 68 12566.0 69 8914.0 70 7837.5 71 6761.0 72 5697.5 73 4634.0 74 3361.0 75 1978.5 76 1869.0 77 1253.0 78 637.0 79 548.5 80 460.0 81 281.5 82 103.0 83 85.0 84 67.0 85 43.0 86 19.0 87 11.5 88 4.0 89 3.5 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2283265.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.899754957826794 #Duplication Level Percentage of deduplicated Percentage of total 1 78.20693947224704 10.870572946658257 2 10.241679636408364 2.8471367460528176 3 3.585124055758994 1.4949703760538053 4 1.6584840356388404 0.9221008678739024 5 0.9370545043878755 0.6512413996559651 6 0.5047991399021585 0.42099506085370375 7 0.3495651815166263 0.3401209255408545 8 0.25445695331509116 0.28295114387159515 9 0.1759871519932965 0.22015604595893765 >10 1.468242638408253 4.553397516602012 >50 0.590998050019768 6.078234349415785 >100 1.95019109812439 63.38291376688756 >500 0.0662354819741126 5.8700423948862035 >1k 0.010242600305275143 2.0651664596886072 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3696 0.1618734575268311 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1001197846066926 0.0 2 0.0 0.0 0.0 0.3623758083271105 0.0 3 0.0 0.0 0.0 0.5007741107580592 0.0 4 0.0 0.0 0.0 0.8360834156350665 0.0 5 0.0 0.0 0.0 1.3327406148651164 0.0 6 0.0 0.0 0.0 1.8388141542922087 0.0 7 0.0 0.0 0.0 2.0828506546546284 0.0 8 0.0 0.0 0.0 2.5962820785147587 0.0 9 0.0 0.0 0.0 2.745016456696879 0.0 10 0.0 0.0 0.0 3.0735810341769354 0.0 11 4.379693114903439E-5 0.0 0.0 3.4411248803796317 0.0 12 4.379693114903439E-5 0.0 0.0 3.8433120991212144 0.0 13 1.3139079344710316E-4 0.0 0.0 3.971374325800991 0.0 14 1.3139079344710316E-4 0.0 0.0 4.034967469829389 0.0 15 1.3139079344710316E-4 0.0 0.0 4.127554182278447 0.0 16 1.3139079344710316E-4 0.0 0.0 4.319384740711218 0.0 17 1.3139079344710316E-4 0.0 0.0 4.516208149294979 0.0 18 1.3139079344710316E-4 0.0 0.0 4.758317584686841 0.0 19 1.3139079344710316E-4 0.0 0.0 4.904117568481976 0.0 20 1.3139079344710316E-4 0.0 0.0 5.029639573155109 0.0 21 1.3139079344710316E-4 0.0 0.0 5.205659439443078 0.0 22 1.7518772459613756E-4 0.0 0.0 5.364817487238669 0.0 23 1.7518772459613756E-4 0.0 0.0 5.5586189075731465 0.0 24 1.7518772459613756E-4 0.0 0.0 5.680637157754356 0.0 25 2.1898465574517192E-4 0.0 0.0 5.774231199619843 0.0 26 2.627815868942063E-4 0.0 0.0 5.87960661596442 0.0 27 2.627815868942063E-4 0.0 0.0 5.967069087469041 0.0 28 2.627815868942063E-4 0.0 0.0 6.07686799385967 0.0 29 2.627815868942063E-4 0.0 0.0 6.1845646475551455 0.0 30 2.627815868942063E-4 0.0 0.0 6.3453869787344 0.0 31 2.627815868942063E-4 0.0 0.0 6.492719855119752 0.0 32 2.627815868942063E-4 0.0 0.0 6.605759734415409 0.0 33 2.627815868942063E-4 0.0 0.0 6.717135330327404 0.0 34 2.627815868942063E-4 0.0 0.0 6.8490078900171465 0.0 35 2.627815868942063E-4 0.0 0.0 7.044035624423796 0.0 36 2.627815868942063E-4 0.0 0.0 7.178711187707077 0.0 37 2.627815868942063E-4 0.0 0.0 7.317459865587218 0.0 38 2.627815868942063E-4 0.0 0.0 7.4386459740765964 0.0 39 2.627815868942063E-4 0.0 0.0 7.5689856411761225 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCATG 30 2.1664473E-6 45.000004 36 GCCCCGA 30 2.1664473E-6 45.000004 22 GTCATCG 30 2.1664473E-6 45.000004 26 AGACTTC 30 2.1664473E-6 45.000004 13 TCTTGTA 45 3.8562575E-10 45.000004 18 GTACCCT 45 3.8562575E-10 45.000004 39 GTACCCC 30 2.1664473E-6 45.000004 13 CGACGGA 75 0.0 45.000004 28 CATGCGT 30 2.1664473E-6 45.000004 14 GCGAATG 150 0.0 45.000004 1 GCGAAGT 30 2.1664473E-6 45.000004 1 CTATATC 30 2.1664473E-6 45.000004 17 ATTAACG 105 0.0 45.000004 1 CAATTGT 45 3.8562575E-10 45.000004 16 TAAGTAT 60 0.0 45.000004 25 CGCGAGA 45 3.8562575E-10 45.000004 27 ATACTGC 45 3.8562575E-10 45.000004 41 GTAATCG 45 3.8562575E-10 45.000004 35 TGCATGC 30 2.1664473E-6 45.000004 43 GTTACAC 30 2.1664473E-6 45.000004 40 >>END_MODULE