SRR1545278_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545278_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2711717
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3640	0.13423229636425926	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3517	0.12969642481129115	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2850	0.1050994628126755	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAACA	35	1.2127384E-7	45.000004	11
ACGTTCA	35	1.2127384E-7	45.000004	19
GCAACCG	35	1.2127384E-7	45.000004	1
GACGTAT	35	1.2127384E-7	45.000004	17
TCCACGT	35	1.2127384E-7	45.000004	16
ATCTACG	20	7.034985E-4	45.0	23
ACGTTCC	20	7.034985E-4	45.0	15
CGCATTA	40	6.8212103E-9	45.0	36
ATTACCG	40	6.8212103E-9	45.0	1
CCAATCG	25	3.892213E-5	45.0	29
TCGTAGT	20	7.034985E-4	45.0	34
TATAGCG	165	0.0	45.0	1
CGGTCGA	20	7.034985E-4	45.0	35
CGCCGTG	25	3.892213E-5	45.0	24
ACCTTCG	20	7.034985E-4	45.0	1
TCGCGAC	25	3.892213E-5	45.0	22
ATCGATA	25	3.892213E-5	45.0	36
GATAGTC	20	7.034985E-4	45.0	9
CGGACTA	20	7.034985E-4	45.0	36
CGTGAAC	30	2.1665983E-6	44.999996	44