SRR1545277_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545277_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1277149
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2161	0.16920500270524427	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1696	0.13279578185474053	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1539	0.12050277610521559	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1491	0.11674440492064747	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAAAA	45	3.8562575E-10	45.000004	21
AACCGTA	20	7.033582E-4	45.0	17
CTATCGA	20	7.033582E-4	45.0	14
CTATACG	50	2.1827873E-11	45.0	1
GTTAGTC	20	7.033582E-4	45.0	17
CCGTCCA	20	7.033582E-4	45.0	37
TACGCCG	20	7.033582E-4	45.0	13
CGCTATA	35	1.2120654E-7	45.0	39
TTGCGTA	20	7.033582E-4	45.0	37
ACGCTCA	20	7.033582E-4	45.0	26
CTATTCG	25	3.8910504E-5	45.0	30
ACCGTTA	20	7.033582E-4	45.0	14
CAGTACG	25	3.8910504E-5	45.0	1
CTCTACG	25	3.8910504E-5	45.0	1
TCGAACG	35	1.2120654E-7	45.0	1
TACACCG	25	3.8910504E-5	45.0	16
TCTAGCG	30	2.1656924E-6	44.999996	1
ATAGCGG	235	0.0	43.085106	2
ATAGGGC	670	0.0	42.985077	4
CGTATTT	300	0.0	42.000004	1