SRR1545274_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545274_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3170271
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3889	0.12267090100499295	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3435	0.10835035869173329	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3283	0.10355581589081818	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAA	20	7.0351665E-4	45.0	18
GTCGACG	25	3.8923645E-5	45.0	11
CGCATCG	20	7.0351665E-4	45.0	21
ATTACGC	25	3.8923645E-5	45.0	31
ATAGCCG	20	7.0351665E-4	45.0	10
TCGATCG	20	7.0351665E-4	45.0	1
ATCCGAT	45	3.8562575E-10	45.0	45
AATGCGT	20	7.0351665E-4	45.0	37
GTCGTAC	25	3.8923645E-5	45.0	32
GAACGTA	45	3.8562575E-10	45.0	11
TTGCGAA	20	7.0351665E-4	45.0	28
AACGACC	25	3.8923645E-5	45.0	20
ACGTCGA	20	7.0351665E-4	45.0	43
ACCCGTA	20	7.0351665E-4	45.0	33
GTACGTA	40	6.8212103E-9	45.0	35
AGTCGAC	25	3.8923645E-5	45.0	10
GTACGAC	25	3.8923645E-5	45.0	19
CTTACGC	20	7.0351665E-4	45.0	11
TCTACGT	30	2.1667147E-6	44.999996	20
GTTCGGA	30	2.1667147E-6	44.999996	42