SRR1545272_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545272_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3174527
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	5737	0.18071983637247374	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3944	0.12423898111435185	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3561	0.11217419161972791	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATTCG	75	0.0	45.000004	1
CGAGTTA	20	7.035166E-4	45.000004	38
CACGACT	35	1.2128294E-7	45.000004	20
CGACTAG	20	7.035166E-4	45.000004	30
CAATCTA	40	6.8212103E-9	45.000004	42
AGTACGT	20	7.035166E-4	45.000004	40
CCCGACA	20	7.035166E-4	45.000004	27
TGACGTA	25	3.8923645E-5	45.0	42
ACTTACG	45	3.8562575E-10	45.0	15
ATCGTGT	50	2.1827873E-11	45.0	11
TACGCTA	25	3.8923645E-5	45.0	1
TACGATC	25	3.8923645E-5	45.0	11
CTACGAT	25	3.8923645E-5	45.0	34
ACCTTCG	45	3.8562575E-10	45.0	32
TATCCGT	25	3.8923645E-5	45.0	27
CCCACTA	55	1.8189894E-12	44.999996	32
CTCGATG	30	2.1667165E-6	44.999996	1
CGTAAGT	30	2.1667165E-6	44.999996	18
TATCGTG	65	0.0	44.999996	1
TCGATAG	135	0.0	43.333332	1