FastQCFastQC Report
Thu 26 May 2016
SRR1545272_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1545272_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences3174527
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT57370.18071983637247374No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39440.12423898111435185No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG35610.11217419161972791No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTCG750.045.0000041
CGAGTTA207.035166E-445.00000438
CACGACT351.2128294E-745.00000420
CGACTAG207.035166E-445.00000430
CAATCTA406.8212103E-945.00000442
AGTACGT207.035166E-445.00000440
CCCGACA207.035166E-445.00000427
TGACGTA253.8923645E-545.042
ACTTACG453.8562575E-1045.015
ATCGTGT502.1827873E-1145.011
TACGCTA253.8923645E-545.01
TACGATC253.8923645E-545.011
CTACGAT253.8923645E-545.034
ACCTTCG453.8562575E-1045.032
TATCCGT253.8923645E-545.027
CCCACTA551.8189894E-1244.99999632
CTCGATG302.1667165E-644.9999961
CGTAAGT302.1667165E-644.99999618
TATCGTG650.044.9999961
TCGATAG1350.043.3333321