##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545272_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3174527 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.268294142717956 31.0 31.0 33.0 30.0 34.0 2 31.5675711688702 31.0 31.0 34.0 30.0 34.0 3 31.64682014044927 31.0 31.0 34.0 30.0 34.0 4 30.268196490374788 35.0 33.0 37.0 0.0 37.0 5 32.817351687353735 35.0 33.0 37.0 19.0 37.0 6 34.43777419439179 35.0 33.0 37.0 30.0 37.0 7 35.50098991125292 36.0 35.0 37.0 33.0 37.0 8 35.69881812314087 37.0 35.0 37.0 35.0 37.0 9 37.73173704303035 39.0 37.0 39.0 35.0 39.0 10 37.144002240333755 39.0 37.0 39.0 33.0 39.0 11 36.65943461813366 39.0 35.0 39.0 32.0 39.0 12 35.43793957336006 37.0 35.0 39.0 31.0 39.0 13 34.933418427375166 35.0 34.0 39.0 30.0 39.0 14 35.70984748279035 37.0 34.0 40.0 30.0 41.0 15 36.07512111253109 37.0 35.0 40.0 31.0 41.0 16 36.277391876018065 37.0 35.0 40.0 31.0 41.0 17 36.21791939397586 36.0 35.0 40.0 31.0 41.0 18 36.22415937870429 36.0 35.0 40.0 31.0 41.0 19 36.21309347817801 36.0 35.0 40.0 31.0 41.0 20 36.10532151718981 36.0 34.0 40.0 31.0 41.0 21 35.92745438926807 36.0 34.0 40.0 31.0 41.0 22 35.79516192491039 36.0 34.0 40.0 30.0 41.0 23 35.75558406023953 36.0 34.0 40.0 30.0 41.0 24 35.68052909929574 35.0 34.0 40.0 30.0 41.0 25 35.563128302263614 35.0 34.0 40.0 30.0 41.0 26 35.42029883507055 35.0 34.0 40.0 30.0 41.0 27 35.40987271489579 35.0 34.0 40.0 30.0 41.0 28 35.45187046763187 36.0 34.0 40.0 30.0 41.0 29 35.551195500936046 36.0 34.0 40.0 30.0 41.0 30 35.48330160682205 36.0 34.0 40.0 30.0 41.0 31 35.344711826360275 36.0 34.0 40.0 30.0 41.0 32 35.20657565678288 35.0 34.0 40.0 29.0 41.0 33 35.068822221389205 35.0 34.0 40.0 29.0 41.0 34 34.99198179760323 35.0 34.0 40.0 29.0 41.0 35 34.9089442301168 35.0 34.0 40.0 29.0 41.0 36 34.71569528310832 35.0 33.0 40.0 27.0 41.0 37 34.60693797847679 35.0 33.0 40.0 27.0 41.0 38 34.60692474815933 35.0 33.0 40.0 27.0 41.0 39 34.59383366403877 35.0 33.0 40.0 27.0 41.0 40 34.49224719147136 35.0 33.0 40.0 27.0 41.0 41 34.498792733531644 35.0 33.0 40.0 27.0 41.0 42 34.43625617296687 35.0 33.0 39.0 27.0 41.0 43 34.33863060544138 35.0 33.0 39.0 27.0 41.0 44 34.263936958167314 35.0 33.0 39.0 27.0 41.0 45 34.15799204101902 35.0 33.0 39.0 26.0 41.0 46 34.103923198637155 35.0 33.0 39.0 26.0 41.0 47 34.032931835199385 35.0 33.0 39.0 26.0 41.0 48 33.96814454562837 35.0 33.0 39.0 26.0 41.0 49 33.93287094423831 35.0 33.0 39.0 26.0 41.0 50 33.757972762556435 35.0 33.0 38.0 25.0 40.0 51 33.66837957276785 35.0 33.0 38.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 6.0 13 7.0 14 20.0 15 76.0 16 211.0 17 523.0 18 1341.0 19 2759.0 20 4828.0 21 7800.0 22 12490.0 23 18185.0 24 25705.0 25 35032.0 26 45689.0 27 56711.0 28 68175.0 29 83621.0 30 103479.0 31 130227.0 32 167011.0 33 245596.0 34 373740.0 35 513083.0 36 224701.0 37 272574.0 38 351218.0 39 429387.0 40 330.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.3226105810409 25.2350980161769 30.017385267159487 12.424906135622724 2 26.920199450185805 27.22597728732501 31.970085622204504 13.88373764028468 3 28.05047807122132 26.12789243877907 31.323154599094604 14.498474890905008 4 22.313402910102827 38.35973044173195 26.980491896903064 12.346374751262157 5 23.589467029261368 32.252804906053726 29.76226064544419 14.395467419240724 6 21.074100173033653 41.68381620316979 25.86312858577042 11.378955038026138 7 89.71727126592403 4.435999441806606 4.259973218057367 1.5867560742120008 8 91.99077531865377 2.4739748630268386 3.471950309447675 2.063299508871715 9 88.96821479231394 4.065172543815189 4.704574886274396 2.2620377775964733 10 61.020901696536214 21.86234358693437 8.317554079710144 8.79920063681928 11 53.560798191352596 18.4154363783959 16.2273623755602 11.796403054691297 12 48.02409933826362 21.67538660090149 17.56041136207063 12.740102698764257 13 21.111460069484366 45.88267795485753 18.316177496679035 14.689684478979073 14 13.972947780882002 45.80121700020192 24.6022478309367 15.623587387979374 15 14.589890084412577 22.83288187500059 49.13163441356775 13.44559362701908 16 16.040058881212854 18.06083236967271 46.67227590126025 19.226832847854183 17 16.10526544584437 19.646958428767498 25.61991124977044 38.62786487561769 18 22.495256773686283 24.33691696432256 31.757865029971395 21.40996123201976 19 32.43302073033242 25.763806702541824 20.369585768210506 21.43358679891524 20 35.756413475141336 24.299683070895288 21.268774844252388 18.67512860971099 21 23.884251102605205 30.287945259246495 24.422347014216605 21.40545662393169 22 23.91836642120228 26.588464990217442 21.68285228004046 27.81031630853982 23 22.07572970713432 32.09492311768021 21.701343223730653 24.128003951454815 24 22.15268605370186 23.385027123725834 37.29172881503292 17.17055800753939 25 17.513160228279677 26.59832472680182 34.168428871450764 21.72008617346773 26 17.075835234666457 38.94589650678668 23.914617831254862 20.063650427292004 27 19.6974541404121 35.46720503558483 26.66850841085932 18.166832413143755 28 14.879980545133181 29.611529528651044 38.39608231399512 17.112407612220657 29 16.667238930398135 24.668462419755762 36.944905493007305 21.719393156838798 30 20.909634726685265 31.190567917677186 28.22014114228671 19.679656213350842 31 33.136023098874254 27.40653961991818 20.033630206956815 19.423807074250746 32 35.00178136774392 27.472565204202077 21.304654205177652 16.220999222876355 33 30.177031097861196 28.884145575073074 21.220799193076637 19.718024133989097 34 19.76262920428776 28.06528342647582 26.39816892406333 25.773918445173095 35 21.5957526900858 25.533914186270902 28.798526520643865 24.071806602999438 36 32.95237369220674 25.806616229756436 23.008656092702946 18.232353985333877 37 22.739734139920685 33.058657242480535 26.607333942977963 17.594274674620817 38 20.909067713079775 35.70213767279346 21.79622350038289 21.592571113743876 39 22.221231698454606 33.5150716941453 24.39484685435027 19.868849753049826 40 26.570982070714788 26.079507277777132 22.29916456845382 25.050346083054265 41 17.894980890066456 24.399162457903177 24.968066108746278 32.737790543284085 42 22.823274144463095 26.446837591868018 21.42624712279971 29.303641140869175 43 22.374577377984185 27.45716133458622 23.703184757918265 26.46507652951133 44 20.83072533325437 30.997121775937014 26.207211342036153 21.96494154877246 45 18.470247693593407 37.62774737779833 20.191385992306884 23.710618936301376 46 22.37646742333582 34.316072914169574 22.83918202617272 20.468277636321883 47 21.774172971280446 25.868357711243284 26.76556223966594 25.591907077810333 48 24.510864138184996 20.91013873877904 31.50248840220921 23.076508720826755 49 20.49001315786572 23.175484095740877 31.855863881453832 24.478638864939565 50 18.902879074583396 34.19690555474879 25.354706386179735 21.54550898448808 51 17.915298877596566 34.42859361410377 22.574607177699228 25.08150033060043 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 550.0 1 978.5 2 1407.0 3 4600.5 4 7794.0 5 5749.0 6 3704.0 7 4093.0 8 4482.0 9 5045.0 10 5608.0 11 5884.0 12 6160.0 13 6361.0 14 6562.0 15 6262.5 16 5963.0 17 5967.0 18 5971.0 19 5518.0 20 5065.0 21 5150.5 22 5236.0 23 6380.5 24 7525.0 25 9823.5 26 14437.0 27 16752.0 28 25197.0 29 33642.0 30 40193.5 31 46745.0 32 49612.5 33 52480.0 34 61728.5 35 70977.0 36 76928.5 37 82880.0 38 108576.0 39 134272.0 40 188566.0 41 242860.0 42 299494.0 43 356128.0 44 345432.0 45 334736.0 46 309344.0 47 283952.0 48 271890.0 49 259828.0 50 245749.5 51 231671.0 52 209445.5 53 187220.0 54 173315.0 55 159410.0 56 146139.0 57 132868.0 58 128675.5 59 124483.0 60 120158.5 61 115834.0 62 95456.5 63 75079.0 64 64185.0 65 53291.0 66 43875.0 67 34459.0 68 28323.5 69 22188.0 70 19806.0 71 17424.0 72 15298.5 73 13173.0 74 10307.0 75 5269.5 76 3098.0 77 2226.5 78 1355.0 79 1243.0 80 1131.0 81 892.0 82 653.0 83 436.5 84 220.0 85 165.5 86 111.0 87 61.0 88 11.0 89 7.5 90 4.0 91 2.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3174527.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.510980682956482 #Duplication Level Percentage of deduplicated Percentage of total 1 76.29273421208163 11.833751266135312 2 10.38443772178616 3.221456258119795 3 3.9198562054641326 1.8240244164876376 4 1.9048420163707218 1.1818387088004059 5 1.102562783574959 0.8550915018888959 6 0.6868905671551596 0.6392607791069223 7 0.47716388189290815 0.5180895828251799 8 0.3285120167361214 0.4076434836570445 9 0.26321051122226824 0.36743878396077334 >10 2.068868767965614 7.147172425790357 >50 0.7606592339783791 8.647486867928752 >100 1.7695073747698427 58.46631050941401 >500 0.03632484754541384 3.5579483413058957 >1k 0.004208366483919896 1.1353882387697924 >5k 2.2149297283788927E-4 0.1970988358091957 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 5737 0.18071983637247374 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3944 0.12423898111435185 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 3561 0.11217419161972791 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0883281194332258 0.0 2 0.0 0.0 0.0 0.2931775347949474 0.0 3 0.0 0.0 0.0 0.408501802000739 0.0 4 0.0 0.0 0.0 0.6485060609029314 0.0 5 3.150075586063688E-5 0.0 0.0 1.0546768069699832 0.0 6 3.150075586063688E-5 0.0 0.0 1.4628005999003946 0.0 7 3.150075586063688E-5 0.0 0.0 1.676942738241004 0.0 8 3.150075586063688E-5 0.0 0.0 2.218440731485352 0.0 9 3.150075586063688E-5 0.0 0.0 2.3745584775306683 0.0 10 6.300151172127376E-5 0.0 0.0 2.652899156315256 0.0 11 6.300151172127376E-5 0.0 0.0 3.0980993388936366 0.0 12 9.450226758191063E-5 0.0 0.0 3.4444186488254784 0.0 13 9.450226758191063E-5 0.0 0.0 3.583179478391584 0.0 14 9.450226758191063E-5 0.0 0.0 3.635376230852659 0.0 15 9.450226758191063E-5 0.0 0.0 3.7160181658558895 0.0 16 9.450226758191063E-5 0.0 0.0 3.9010851065371313 0.0 17 9.450226758191063E-5 0.0 0.0 4.13891581328494 0.0 18 1.260030234425475E-4 0.0 0.0 4.407081747926542 0.0 19 1.260030234425475E-4 0.0 0.0 4.583548982257829 0.0 20 1.5750377930318437E-4 0.0 0.0 4.752550537450146 0.0 21 1.5750377930318437E-4 0.0 0.0 4.980206500054969 0.0 22 1.5750377930318437E-4 0.0 0.0 5.224998873847978 0.0 23 1.5750377930318437E-4 0.0 0.0 5.495495864423267 0.0 24 1.5750377930318437E-4 0.0 0.0 5.706739933224697 0.0 25 1.5750377930318437E-4 0.0 0.0 5.869063328174559 0.0 26 1.5750377930318437E-4 0.0 0.0 6.024992069684712 0.0 27 1.5750377930318437E-4 0.0 0.0 6.167942499780282 0.0 28 1.8900453516382127E-4 0.0 0.0 6.330580902288751 0.0 29 1.8900453516382127E-4 0.0 0.0 6.518766417800195 0.0 30 1.8900453516382127E-4 0.0 0.0 6.758518670655502 0.0 31 1.8900453516382127E-4 0.0 0.0 6.971148772714801 0.0 32 1.8900453516382127E-4 0.0 0.0 7.153853156706496 0.0 33 2.2050529102445813E-4 0.0 0.0 7.34109364954212 0.0 34 2.2050529102445813E-4 0.0 0.0 7.545061043739745 0.0 35 2.2050529102445813E-4 0.0 0.0 7.799524149581969 0.0 36 2.52006046885095E-4 0.0 0.0 8.016595858217618 0.0 37 3.1500755860636875E-4 0.0 0.0 8.233604565341546 0.0 38 3.1500755860636875E-4 0.0 0.0 8.442612080476872 0.0 39 3.1500755860636875E-4 0.0 0.0 8.651651096368058 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATTCG 75 0.0 45.000004 1 CGAGTTA 20 7.035166E-4 45.000004 38 CACGACT 35 1.2128294E-7 45.000004 20 CGACTAG 20 7.035166E-4 45.000004 30 CAATCTA 40 6.8212103E-9 45.000004 42 AGTACGT 20 7.035166E-4 45.000004 40 CCCGACA 20 7.035166E-4 45.000004 27 TGACGTA 25 3.8923645E-5 45.0 42 ACTTACG 45 3.8562575E-10 45.0 15 ATCGTGT 50 2.1827873E-11 45.0 11 TACGCTA 25 3.8923645E-5 45.0 1 TACGATC 25 3.8923645E-5 45.0 11 CTACGAT 25 3.8923645E-5 45.0 34 ACCTTCG 45 3.8562575E-10 45.0 32 TATCCGT 25 3.8923645E-5 45.0 27 CCCACTA 55 1.8189894E-12 44.999996 32 CTCGATG 30 2.1667165E-6 44.999996 1 CGTAAGT 30 2.1667165E-6 44.999996 18 TATCGTG 65 0.0 44.999996 1 TCGATAG 135 0.0 43.333332 1 >>END_MODULE