SRR1545270_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545270_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2472328
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2975	0.1203319300675315	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2912	0.11778372448963083	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2548	0.10306075892842698	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATCG	20	7.034863E-4	45.000004	16
CGTGCGC	20	7.034863E-4	45.000004	27
CGACACT	20	7.034863E-4	45.000004	40
ACTTACG	40	6.8212103E-9	45.000004	38
CTACGTT	20	7.034863E-4	45.000004	30
GCGTGTT	20	7.034863E-4	45.000004	36
ATACGTC	40	6.8212103E-9	45.000004	20
ATCGGCC	40	6.8212103E-9	45.000004	30
CTTACGA	20	7.034863E-4	45.000004	31
CGAACGC	25	3.8921142E-5	45.0	24
GACACGC	35	1.2126839E-7	45.0	33
CGACATA	25	3.8921142E-5	45.0	23
TCTAGCG	45	3.8562575E-10	45.0	1
TAGCCGT	35	1.2126839E-7	45.0	44
ATATACG	50	2.1827873E-11	45.0	1
TATTACG	100	0.0	45.0	1
CGAATCC	45	3.8562575E-10	45.0	28
TCATCGG	35	1.2126839E-7	45.0	2
CCGCGAA	25	3.8921142E-5	45.0	33
CTATGCG	130	0.0	44.999996	1