SRR1545259_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545259_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1793660
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	7786	0.4340844976193928	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7722	0.4305163743407335	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7027	0.3917687856115429	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3769	0.21012900995729403	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1846	0.10291805581882855	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTAGCG	65	0.0	45.000004	1
TGTTCGG	65	0.0	45.000004	2
GTGCATC	25	3.8916834E-5	45.0	10
TTGATCG	35	1.2124292E-7	45.0	1
CCTTACC	40	6.8193913E-9	45.0	18
TCCGCGA	25	3.8916834E-5	45.0	39
ACGCACG	25	3.8916834E-5	45.0	1
TCGATTG	90	0.0	45.0	1
GCGCATC	25	3.8916834E-5	45.0	21
ATCGTAG	40	6.8193913E-9	45.0	1
ACGTGCG	55	1.8189894E-12	45.0	1
TATTACG	70	0.0	45.0	1
AGCGATG	90	0.0	45.0	1
TTACGTA	20	7.034345E-4	45.0	32
TTACGCG	55	1.8189894E-12	45.0	1
CTTTCGT	20	7.034345E-4	45.0	16
TTGCACG	40	6.8193913E-9	45.0	1
GCGCTAA	20	7.034345E-4	45.0	41
GTGCGTT	20	7.034345E-4	45.0	1
TGTCGAC	25	3.8916834E-5	45.0	21