##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545259_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1793660 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.34260506450498 31.0 31.0 34.0 30.0 34.0 2 31.597496738512316 31.0 31.0 34.0 30.0 34.0 3 31.682824504086618 31.0 31.0 34.0 30.0 34.0 4 35.438794977866486 37.0 35.0 37.0 33.0 37.0 5 35.29931257874959 37.0 35.0 37.0 33.0 37.0 6 35.29050488944393 37.0 35.0 37.0 32.0 37.0 7 35.90961218960115 37.0 35.0 37.0 35.0 37.0 8 36.01580232597036 37.0 35.0 37.0 35.0 37.0 9 37.71810320796583 39.0 38.0 39.0 35.0 39.0 10 36.93475575081119 39.0 37.0 39.0 32.0 39.0 11 36.53014562403131 39.0 35.0 39.0 32.0 39.0 12 35.392025244472194 37.0 35.0 39.0 31.0 39.0 13 34.83457734464726 37.0 34.0 39.0 28.0 39.0 14 35.59651940724552 37.0 34.0 40.0 27.0 41.0 15 36.15077718185163 37.0 35.0 40.0 31.0 41.0 16 36.149723470445906 37.0 35.0 40.0 31.0 41.0 17 36.26381365476177 37.0 35.0 40.0 31.0 41.0 18 36.37872952510509 37.0 35.0 40.0 31.0 41.0 19 36.293812093707835 36.0 35.0 40.0 31.0 41.0 20 36.12637512126044 36.0 35.0 40.0 31.0 41.0 21 35.99022724485131 36.0 34.0 40.0 31.0 41.0 22 35.876903092001825 36.0 34.0 40.0 30.0 41.0 23 35.845702084007 35.0 34.0 40.0 31.0 41.0 24 35.663598452326525 35.0 34.0 40.0 30.0 41.0 25 35.676250236945684 35.0 34.0 40.0 30.0 41.0 26 35.56717939854822 35.0 34.0 40.0 30.0 41.0 27 35.536120557965276 35.0 34.0 40.0 30.0 41.0 28 35.65603737609134 36.0 34.0 40.0 30.0 41.0 29 35.672635282048994 36.0 34.0 40.0 30.0 41.0 30 35.59546346576274 36.0 34.0 40.0 30.0 41.0 31 35.44357514802137 36.0 34.0 40.0 30.0 41.0 32 35.30326817791555 35.0 34.0 40.0 30.0 41.0 33 35.11528048794086 35.0 34.0 40.0 29.0 41.0 34 34.99287546134719 35.0 34.0 40.0 29.0 41.0 35 34.86188408059498 35.0 34.0 40.0 28.0 41.0 36 34.56970719088344 35.0 33.0 40.0 26.0 41.0 37 34.406727027418796 35.0 33.0 40.0 26.0 41.0 38 34.5544294905389 35.0 33.0 40.0 27.0 41.0 39 34.583953480592754 35.0 34.0 40.0 27.0 41.0 40 34.42823612055796 35.0 33.0 40.0 25.0 41.0 41 34.496943679404126 35.0 34.0 40.0 27.0 41.0 42 34.424097655073986 35.0 33.0 40.0 27.0 41.0 43 34.3289926741969 35.0 33.0 40.0 27.0 41.0 44 34.261205579652774 35.0 33.0 40.0 26.0 41.0 45 34.20836278893436 35.0 33.0 39.0 26.0 41.0 46 34.14621332917052 35.0 33.0 39.0 26.0 41.0 47 34.20172273452048 35.0 33.0 39.0 26.0 41.0 48 34.27393708952644 35.0 33.0 39.0 27.0 41.0 49 34.29500295485209 35.0 34.0 39.0 26.0 41.0 50 34.09638504510331 35.0 33.0 39.0 26.0 41.0 51 33.89789034711149 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 4.0 14 14.0 15 38.0 16 114.0 17 360.0 18 815.0 19 1526.0 20 2752.0 21 4430.0 22 6965.0 23 10157.0 24 14417.0 25 20535.0 26 26515.0 27 31492.0 28 36043.0 29 42299.0 30 52018.0 31 66291.0 32 86028.0 33 115496.0 34 204443.0 35 317509.0 36 116574.0 37 133918.0 38 191189.0 39 311448.0 40 268.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.29547405862873 25.120201152949832 28.81069990968188 13.77362487873956 2 28.892989752795962 26.781329794944416 31.50139937334835 12.824281078911277 3 26.602421863675392 26.44687398949634 33.01222082222941 13.938483324598867 4 24.69280688647793 29.82772654795223 31.598519228839354 13.880947336730484 5 22.15352965444956 32.94938840136927 30.733583845321853 14.163498098859314 6 20.741166107289008 40.787049942575514 27.826845667517812 10.644938282617664 7 87.89001259993533 4.986954049262402 5.492958531717271 1.6300748190849992 8 89.77972413946902 4.008284736237637 4.839322948607874 1.37266817568547 9 86.46359956736505 4.9546736839757815 6.407903393062231 2.173823355596936 10 55.24976862950615 24.58587469197061 12.346152559570934 7.81820411895231 11 49.24768350746518 17.72309133280555 21.270809406464995 11.758415753264275 12 47.06243100699129 21.279004939620663 21.955387308631515 9.703176744756531 13 18.702262413166377 51.1215057480236 18.700478351527046 11.475753487282986 14 11.602979382937681 49.04641905377831 24.18033518058049 15.170266382703524 15 9.335771550907083 24.19784128541641 52.92301774026292 13.543369423413578 16 10.80271623384588 17.740374429936555 49.641347858568516 21.815561477649055 17 10.606023438109787 19.52449182119242 29.624622280699796 40.244862459998 18 16.868971822976484 22.90328155837784 40.95491899245119 19.272827626194484 19 29.268478975948618 25.998015231426248 24.229564131440743 20.503941661184395 20 32.37938070760345 21.884192098837016 27.324130548710457 18.41229664484908 21 17.070347780515817 33.975335347836264 26.98554910072143 21.968767770926487 22 19.846236187460274 26.7745838118707 20.66333641827325 32.71584358239577 23 14.573051748937926 34.261621489022446 24.9631479767626 26.20217878527703 24 13.74134451345294 23.147586499113544 49.26262502369457 13.848443963738946 25 11.553917687856115 29.931480882664495 40.64064538429803 17.87395604518136 26 13.070648840917453 39.9541161647135 26.75278480871514 20.222450185653916 27 11.947136023549614 43.47122643087319 25.623752550650625 18.957884994926573 28 9.975413400532988 32.0054525383852 40.00903181204911 18.010102249032702 29 10.4283420492178 23.5079111983319 40.7668677452806 25.296879007169697 30 14.846291939386505 39.00588740340979 30.323026660571124 15.824793996632582 31 29.009678534393363 32.119130715966236 23.376002140873968 15.495188608766433 32 32.19556660682626 25.23019970339975 24.98009656233623 17.594137127437754 33 29.817969960862143 30.11635427004003 21.770736928960897 18.294938840136926 34 16.132042862080883 26.056108738556915 27.004114492155708 30.80773390720649 35 17.39872662600493 25.349230065898777 33.56516842656914 23.686874881527157 36 31.25079446494876 28.362008407390476 23.60965846369992 16.77753866396084 37 15.547260907864366 40.41195098290646 28.647904285093052 15.392883824136124 38 15.082066835409163 38.283398191407514 27.64481562837996 18.989719344803362 39 16.51483558756955 40.11875160286788 26.57064326572483 16.79576954383774 40 25.554118394790542 26.220130905522787 25.6037376091344 22.62201309055228 41 13.885184483123892 24.343409564800464 28.495534270709054 33.275871681366596 42 15.860363725566717 24.80720983909994 25.36545387643143 33.96697255890191 43 17.349943690554507 25.32486647413668 28.526811101323553 28.79837873398526 44 15.415742113890035 30.03462194618824 32.782913149649325 21.766722790272404 45 12.738144352887392 46.23674497953904 20.971477314541218 20.053633353032346 46 17.50259246456965 40.190281324219754 24.69676527324019 17.610360937970405 47 15.60050399741311 30.33194696876777 28.49386171292218 25.573687320896937 48 17.038569182565258 24.708696185453206 37.339852591907054 20.912882040074486 49 17.675367683953482 27.250872517645487 36.86138956100933 18.2123702373917 50 16.678913506461647 39.7973417481574 27.520767592520322 16.00297715286063 51 13.957884994926575 36.89439470133693 26.57945207006902 22.568268233667474 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7986.0 1 6220.5 2 4455.0 3 8280.0 4 12105.0 5 8582.0 6 5059.0 7 5498.0 8 5937.0 9 6508.0 10 7079.0 11 7469.0 12 7859.0 13 7761.0 14 7663.0 15 7552.0 16 7441.0 17 6958.0 18 6475.0 19 6348.5 20 6222.0 21 5914.0 22 5606.0 23 6195.5 24 6785.0 25 8146.5 26 12775.5 27 16043.0 28 20836.5 29 25630.0 30 32184.5 31 38739.0 32 46383.5 33 54028.0 34 66527.0 35 79026.0 36 81729.0 37 84432.0 38 95203.0 39 105974.0 40 139555.0 41 173136.0 42 204463.5 43 235791.0 44 229364.5 45 222938.0 46 205527.0 47 188116.0 48 160787.5 49 133459.0 50 117417.0 51 101375.0 52 86321.0 53 71267.0 54 58375.5 55 45484.0 56 38862.5 57 32241.0 58 28237.0 59 24233.0 60 21051.0 61 17869.0 62 15821.5 63 13774.0 64 11378.0 65 8982.0 66 7748.5 67 6515.0 68 5316.5 69 4118.0 70 3904.0 71 3690.0 72 3253.0 73 2816.0 74 2400.5 75 1381.0 76 777.0 77 682.5 78 588.0 79 403.5 80 219.0 81 185.5 82 152.0 83 89.0 84 26.0 85 33.0 86 40.0 87 23.0 88 6.0 89 8.5 90 11.0 91 5.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1793660.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.319759883107015 #Duplication Level Percentage of deduplicated Percentage of total 1 78.33931247985296 12.78478769078889 2 8.40510536924007 2.7433860283642293 3 2.9984364785825948 1.4680129006565068 4 1.4821898907305437 0.9675593247156439 5 0.9049491019341306 0.7384276024999172 6 0.5647212841592765 0.5529669455015542 7 0.42867384845485706 0.48970979924654706 8 0.3493411822102672 0.4560931368761837 9 0.27927545539794457 0.4101937536005836 >10 3.4030607436130116 13.362376733433448 >50 1.317746682099644 15.126284682285466 >100 1.5003451505232843 46.56155865480635 >500 0.022957258659136833 2.257740413550732 >1k 0.00282550875804761 0.7819955116324427 >5k 0.001059565784267854 1.2989068220415048 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 7786 0.4340844976193928 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7722 0.4305163743407335 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7027 0.3917687856115429 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3769 0.21012900995729403 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1846 0.10291805581882855 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0390821002865649 0.0 2 0.0 0.0 0.0 0.12967898040877313 0.0 3 0.0 0.0 0.0 0.18927778954762886 0.0 4 0.0 0.0 0.0 0.2535597604897249 0.0 5 0.0 0.0 0.0 0.45499146995528694 0.0 6 0.0 0.0 0.0 0.6537470869618546 0.0 7 0.0 0.0 0.0 0.801322435690153 0.0 8 0.0 0.0 0.0 1.1814390687198242 0.0 9 0.0 0.0 0.0 1.3483045839233745 0.0 10 0.0 0.0 0.0 1.624276618757178 0.0 11 0.0 0.0 0.0 1.8587692204765676 0.0 12 0.0 0.0 0.0 2.0724106017862916 0.0 13 0.0 0.0 0.0 2.158491575883947 0.0 14 0.0 0.0 0.0 2.18592152358864 0.0 15 0.0 0.0 0.0 2.2302443049407357 0.0 16 0.0 0.0 0.0 2.3399640957595085 0.0 17 0.0 0.0 0.0 2.473043943668254 0.0 18 0.0 0.0 0.0 2.697947214076246 0.0 19 0.0 0.0 0.0 2.780125553337868 0.0 20 0.0 0.0 0.0 2.86754457366502 0.0 21 0.0 0.0 0.0 2.997892577188542 0.0 22 0.0 0.0 0.0 3.1283520845645216 0.0 23 0.0 0.0 0.0 3.303747644481117 0.0 24 1.6725577868715365E-4 0.0 0.0 3.4331478652587446 0.0 25 2.2300770491620486E-4 0.0 0.0 3.5289296745202545 0.0 26 2.2300770491620486E-4 0.0 0.0 3.628056599355508 0.0 27 2.2300770491620486E-4 0.0 0.0 3.723057881649811 0.0 28 2.2300770491620486E-4 0.0 0.0 3.824637891239142 0.0 29 2.2300770491620486E-4 0.0 0.0 3.9442815249266863 0.0 30 2.2300770491620486E-4 0.0 0.0 4.121015131072778 0.0 31 2.2300770491620486E-4 0.0 0.0 4.255767536768396 0.0 32 2.2300770491620486E-4 0.0 0.0 4.37184304717728 0.0 33 2.2300770491620486E-4 0.0 0.0 4.480392047545243 0.0 34 2.2300770491620486E-4 0.0 0.0 4.610461291437619 0.0 35 2.2300770491620486E-4 0.0 0.0 4.813286799058908 0.0 36 2.2300770491620486E-4 0.0 0.0 4.945418864221759 0.0 37 2.2300770491620486E-4 0.0 0.0 5.080673037253437 0.0 38 2.7875963114525607E-4 0.0 0.0 5.21035201766221 0.0 39 2.7875963114525607E-4 0.0 0.0 5.338023928726738 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTAGCG 65 0.0 45.000004 1 TGTTCGG 65 0.0 45.000004 2 GTGCATC 25 3.8916834E-5 45.0 10 TTGATCG 35 1.2124292E-7 45.0 1 CCTTACC 40 6.8193913E-9 45.0 18 TCCGCGA 25 3.8916834E-5 45.0 39 ACGCACG 25 3.8916834E-5 45.0 1 TCGATTG 90 0.0 45.0 1 GCGCATC 25 3.8916834E-5 45.0 21 ATCGTAG 40 6.8193913E-9 45.0 1 ACGTGCG 55 1.8189894E-12 45.0 1 TATTACG 70 0.0 45.0 1 AGCGATG 90 0.0 45.0 1 TTACGTA 20 7.034345E-4 45.0 32 TTACGCG 55 1.8189894E-12 45.0 1 CTTTCGT 20 7.034345E-4 45.0 16 TTGCACG 40 6.8193913E-9 45.0 1 GCGCTAA 20 7.034345E-4 45.0 41 GTGCGTT 20 7.034345E-4 45.0 1 TGTCGAC 25 3.8916834E-5 45.0 21 >>END_MODULE