SRR1545256_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545256_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2018483
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10165	0.5035960174051504	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5897	0.29215009489800015	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3941	0.1952456374415836	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3549	0.17582511222536926	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3105	0.15382839488863667	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAACG	60	0.0	45.000004	1
TCTAGCG	30	2.1663218E-6	45.000004	1
CCGTAAG	70	0.0	45.000004	1
TAATGCG	105	0.0	45.000004	1
GTCGCAA	25	3.891858E-5	45.0	35
CATTCGA	25	3.891858E-5	45.0	16
TCCTATA	25	3.891858E-5	45.0	44
CCGTACA	20	7.0345565E-4	45.0	44
CGTAGTG	20	7.0345565E-4	45.0	36
GTATGCG	50	2.1827873E-11	45.0	1
CTACGAT	20	7.0345565E-4	45.0	31
CACCGTT	25	3.891858E-5	45.0	24
TCGACAC	20	7.0345565E-4	45.0	34
ACGCGTA	25	3.891858E-5	45.0	23
TACGGGA	305	0.0	42.78688	4
GCTACGA	515	0.0	42.37864	10
ACGTTAG	165	0.0	42.272728	1
CGACGGT	215	0.0	41.860462	28
CCCGTAT	70	0.0	41.785717	31
CTTTACG	70	0.0	41.785717	19