SRR1545253_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545253_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2637256
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14186	0.5379075827299283	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	11101	0.42092993626708974	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10843	0.4111470407120128	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	6021	0.22830548115162125	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4325	0.16399621424692937	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATGT	30	2.1665746E-6	45.000004	34
GCGATAC	95	0.0	45.000004	9
ACGTCCA	30	2.1665746E-6	45.000004	26
AATCCCG	25	3.892184E-5	45.0	28
GTACCAG	25	3.892184E-5	45.0	1
GTCGACG	90	0.0	45.0	1
TCCGATC	25	3.892184E-5	45.0	14
ACGTTAG	90	0.0	45.0	1
GTTTAGT	20	7.0349505E-4	45.0	44
AACCACG	35	1.2127202E-7	45.0	1
ACCGACA	25	3.892184E-5	45.0	27
CGATTCG	80	0.0	45.0	10
CGCGAAA	20	7.0349505E-4	45.0	26
CGTTCGA	25	3.892184E-5	45.0	14
CCTCGAC	45	3.8562575E-10	45.0	30
ACTAGTC	25	3.892184E-5	45.0	10
ATATCGA	20	7.0349505E-4	45.0	14
CCACTAG	35	1.2127202E-7	45.0	26
TGCGCAC	25	3.892184E-5	45.0	11
CGTAGAA	45	3.8562575E-10	45.0	34