##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545252_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3405795 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.100855747336524 31.0 31.0 33.0 28.0 34.0 2 31.395672082435965 31.0 31.0 34.0 30.0 34.0 3 31.436876558923835 31.0 31.0 34.0 30.0 34.0 4 35.2464329180118 37.0 35.0 37.0 33.0 37.0 5 35.12015197626398 37.0 35.0 37.0 32.0 37.0 6 35.11942292475032 37.0 35.0 37.0 32.0 37.0 7 35.79480444360274 37.0 35.0 37.0 35.0 37.0 8 35.87547606359161 37.0 35.0 37.0 35.0 37.0 9 37.47103246084982 39.0 37.0 39.0 35.0 39.0 10 36.689525353111385 39.0 35.0 39.0 32.0 39.0 11 36.40935758024191 38.0 35.0 39.0 32.0 39.0 12 36.057916874033815 38.0 35.0 39.0 31.0 39.0 13 35.89900713342993 38.0 35.0 39.0 30.0 39.0 14 36.75927558763813 39.0 35.0 41.0 31.0 41.0 15 36.998593867217494 39.0 35.0 41.0 31.0 41.0 16 36.79023076844026 39.0 35.0 41.0 31.0 41.0 17 36.83424751049314 38.0 35.0 41.0 31.0 41.0 18 36.767588477873744 38.0 35.0 40.0 31.0 41.0 19 36.63622267341399 38.0 35.0 40.0 31.0 41.0 20 36.46351820940485 38.0 35.0 40.0 31.0 41.0 21 36.369179883110995 38.0 35.0 40.0 30.0 41.0 22 36.28141388427665 38.0 35.0 40.0 30.0 41.0 23 36.170551662680815 38.0 35.0 40.0 30.0 41.0 24 35.9359952668907 38.0 34.0 40.0 30.0 41.0 25 35.892816801950794 37.0 34.0 40.0 30.0 41.0 26 35.7656256468754 37.0 34.0 40.0 30.0 41.0 27 35.735759198659935 37.0 34.0 40.0 29.0 41.0 28 35.6811190926054 37.0 34.0 40.0 29.0 41.0 29 35.60633714008036 37.0 34.0 40.0 29.0 41.0 30 35.42097748102866 37.0 34.0 40.0 28.0 41.0 31 35.253606573501926 37.0 34.0 40.0 27.0 41.0 32 35.0045763177173 37.0 34.0 40.0 25.0 41.0 33 34.68164907165581 37.0 33.0 40.0 24.0 41.0 34 34.34394084200605 37.0 33.0 40.0 23.0 41.0 35 34.08316560450643 37.0 33.0 40.0 22.0 41.0 36 33.89785732846516 37.0 33.0 40.0 21.0 41.0 37 33.722455696834366 37.0 33.0 40.0 20.0 41.0 38 33.69407994315571 37.0 33.0 40.0 20.0 41.0 39 33.6570985628906 37.0 33.0 40.0 20.0 41.0 40 33.544361595457154 36.0 32.0 40.0 18.0 41.0 41 33.4571699118708 36.0 32.0 40.0 18.0 41.0 42 33.36450344192765 36.0 32.0 40.0 18.0 41.0 43 33.221487494109304 36.0 32.0 40.0 18.0 41.0 44 33.14989070099639 36.0 32.0 40.0 18.0 41.0 45 33.075587050894136 36.0 31.0 40.0 18.0 41.0 46 32.967882095076185 35.0 31.0 40.0 18.0 41.0 47 32.97463264817759 35.0 31.0 40.0 18.0 41.0 48 32.88929779977949 35.0 31.0 40.0 18.0 41.0 49 32.84106031044147 35.0 31.0 39.0 18.0 41.0 50 32.67790515870744 35.0 31.0 39.0 18.0 41.0 51 32.536972718557635 35.0 31.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 4.0 12 10.0 13 12.0 14 40.0 15 159.0 16 464.0 17 1324.0 18 2966.0 19 5635.0 20 9550.0 21 14558.0 22 21302.0 23 30435.0 24 43088.0 25 61592.0 26 80406.0 27 90091.0 28 92293.0 29 97468.0 30 108139.0 31 126797.0 32 150893.0 33 187693.0 34 269534.0 35 343207.0 36 277751.0 37 336392.0 38 454066.0 39 599681.0 40 242.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.079031474296016 22.34468017012181 25.256951754289382 19.319336601292797 2 38.07466391840965 23.539349843428628 26.19925744209502 12.186728796066703 3 28.471972035897643 24.177350662620622 34.29818882228672 13.052488479195018 4 24.857309380041958 26.876309349212153 33.981640116331135 14.284741154414753 5 21.939106728385003 30.687372551783064 33.08246679556462 14.291053924267317 6 20.221475455804004 39.61950146735197 30.64829210213768 9.510730974706346 7 82.00895826084658 4.14913404946569 12.115438539313143 1.7264691503745822 8 82.70074975152644 3.4161774270030936 12.079352985132694 1.8037198363377713 9 77.8984642352226 5.535154053605693 13.656429702903432 2.9099520082682604 10 38.35803388048899 31.060442569209247 19.5108337407272 11.070689809574564 11 29.043967707980073 24.57893091040418 30.95732420771068 15.419777173905064 12 27.303962804572794 22.708853586313914 34.482257446499275 15.504926162614016 13 21.82033856999614 28.308045551772786 33.84187832796748 16.029737550263594 14 18.13165501740416 31.13472772142774 34.58596304240273 16.14765421876537 15 17.275232361313584 25.08060526250112 41.76552023829972 15.878642137885574 16 20.65177146598665 22.775445967828365 39.01670535073309 17.5560772154519 17 20.063920464972202 22.143611109887708 34.03819078952198 23.754277635618116 18 21.24784374866955 23.55344346914597 36.99688325339605 18.201829528788434 19 26.15081060369165 24.1623468235757 31.47147729091152 18.215365281821132 20 26.213292344371876 24.37624695555663 31.789552806319815 17.620907893751678 21 23.242767107239278 25.719751188782645 33.749917420161815 17.28756428381626 22 21.736099794614766 23.579428591562323 32.3440782548568 22.340393358966114 23 19.631980198455867 27.18727932832129 32.71829337937251 20.462447093850333 24 19.228990588100576 25.2390704666605 37.88660210024385 17.645336844995075 25 20.28674655990745 25.752577592015964 35.47430188839904 18.48637395967755 26 18.804889900889513 29.274809552542063 32.243015213775344 19.677285332793076 27 18.58960976805709 28.244741682925717 34.192985778650794 18.97266277036639 28 18.41693349129939 26.544287016687733 36.774497584264466 18.264281907748412 29 19.322537028799445 25.224066627615578 35.78662250663942 19.66677383694556 30 20.3825244913449 27.187161881440307 34.65510989357845 17.775203733636346 31 24.19614216357708 26.373724783787633 31.477584528722367 17.95254852391292 32 25.218605347650108 25.71916395437776 31.189399244522935 17.872831453449194 33 24.950826459020583 26.52508445164785 29.65175531704051 18.87233377229105 34 20.653239551998873 27.314621109021537 31.20813202203891 20.824007316940683 35 20.995685295210077 27.31873174985576 31.975794197830464 19.709788757103702 36 25.371462463242793 28.05926369614143 28.380715809377836 18.188558031237932 37 21.111487919854248 31.147089005650663 29.732411962552064 18.00901111194303 38 21.100535998203064 30.9542999505255 28.750908378220064 19.194255673051373 39 20.846292862606234 30.2309152488626 28.609619780403694 20.31317210812747 40 22.692528469857994 27.089592885067947 30.213180769834942 20.004697875239113 41 19.67329213883983 26.78241056787035 30.28831741194053 23.25597988134929 42 20.733808112349685 27.637923010633347 29.047931540213078 22.580337336803886 43 20.68539063566656 26.942079602559755 30.135078593984666 22.23745116778902 44 20.265253780688504 28.623742767841282 30.88315650237316 20.227846949097053 45 19.692641512480932 31.600580774826437 28.38926006996898 20.31751764272365 46 21.388280856598826 30.113527091325228 29.10198646718314 19.396205584892808 47 20.77702856454954 28.73575773057392 29.590888470973738 20.896325233902804 48 20.457661133450486 28.572653374615914 31.14700092048993 19.822684571443673 49 21.119151328838054 27.62952555864343 31.574213950046904 19.677109162471613 50 20.0172353297835 30.754111741898733 29.938560600388453 19.290092327929308 51 19.64184573645801 30.448808574796782 29.5388301409803 20.37051554776491 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 8494.0 1 7704.5 2 6915.0 3 40101.0 4 73287.0 5 52529.5 6 31772.0 7 31582.0 8 31392.0 9 32372.5 10 33353.0 11 33170.5 12 32988.0 13 32664.0 14 32340.0 15 31280.5 16 30221.0 17 28974.0 18 27727.0 19 26647.0 20 25567.0 21 25526.5 22 25486.0 23 26813.5 24 28141.0 25 31081.0 26 38275.5 27 42530.0 28 47395.5 29 52261.0 30 64096.5 31 75932.0 32 85954.5 33 95977.0 34 105444.5 35 114912.0 36 125578.0 37 136244.0 38 150202.0 39 164160.0 40 183736.5 41 203313.0 42 224321.0 43 245329.0 44 250277.0 45 255225.0 46 253624.5 47 252024.0 48 238674.0 49 225324.0 50 210453.0 51 195582.0 52 181845.0 53 168108.0 54 155608.5 55 143109.0 56 135745.5 57 128382.0 58 122303.0 59 116224.0 60 105818.0 61 95412.0 62 87064.0 63 78716.0 64 68973.0 65 59230.0 66 50388.0 67 41546.0 68 37000.5 69 32455.0 70 27917.0 71 23379.0 72 20149.5 73 16920.0 74 13542.0 75 7989.0 76 5814.0 77 4510.0 78 3206.0 79 2329.5 80 1453.0 81 1126.0 82 799.0 83 493.5 84 188.0 85 143.0 86 98.0 87 70.0 88 42.0 89 34.0 90 26.0 91 15.0 92 4.0 93 2.0 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3405795.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.157192234601652 #Duplication Level Percentage of deduplicated Percentage of total 1 78.15378930270043 18.098223227451886 2 6.009020013219015 2.7830406317536256 3 2.5008921718986046 1.7374092234799927 4 1.6101736670324003 1.4914840455425107 5 1.133390723064341 1.3123073425457554 6 0.8881282388317622 1.2339933813363193 7 0.7039631764615489 1.1411267422380627 8 0.5820177868268531 1.0782318218805476 9 0.4913727506598989 1.0240931921288638 >10 6.198244516918377 33.88198125964512 >50 1.3382399689102709 21.57006810462395 >100 0.38503870876841195 11.879492453292327 >500 0.0033853032366204195 0.5193308789925227 >1k 0.0020832635302279086 0.6586914992144959 >5k 1.3020397063924429E-4 0.22824748919956667 >10k+ 1.3020397063924429E-4 1.3622787066744546 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45181 1.326591882365204 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7570 0.22226822225060525 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.9361720244465684E-5 0.0 0.0 0.024164695761195256 0.0 2 2.9361720244465684E-5 0.0 0.0 0.08018685798763578 0.0 3 2.9361720244465684E-5 0.0 0.0 0.13823497891094444 0.0 4 2.9361720244465684E-5 0.0 0.0 0.18941245729704811 0.0 5 5.872344048893137E-5 0.0 0.0 0.3284402026545931 0.0 6 5.872344048893137E-5 0.0 0.0 0.5705275860702127 0.0 7 5.872344048893137E-5 0.0 0.0 0.7351000280404428 0.0 8 5.872344048893137E-5 0.0 0.0 1.0346776596947262 0.0 9 5.872344048893137E-5 0.0 0.0 1.2070015958094953 0.0 10 5.872344048893137E-5 0.0 0.0 1.430620457191346 0.0 11 5.872344048893137E-5 0.0 0.0 1.5903482153212392 0.0 12 5.872344048893137E-5 0.0 0.0 1.726968299618738 0.0 13 8.808516073339705E-5 0.0 0.0 1.7974070664852113 0.0 14 8.808516073339705E-5 0.0 0.0 1.8432113500665777 0.0 15 1.4680860122232841E-4 0.0 0.0 1.8811760543426719 0.0 16 1.4680860122232841E-4 0.0 0.0 1.9468288608092972 0.0 17 1.4680860122232841E-4 0.0 0.0 2.0268689101957107 0.0 18 1.4680860122232841E-4 0.0 0.0 2.154445584657914 0.0 19 1.4680860122232841E-4 0.0 0.0 2.2088528522709088 0.0 20 1.4680860122232841E-4 0.0 0.0 2.2725677852013995 0.0 21 1.4680860122232841E-4 0.0 0.0 2.338954634674136 0.0 22 1.4680860122232841E-4 0.0 0.0 2.416381490958792 0.0 23 1.4680860122232841E-4 0.0 0.0 2.5096343144552153 0.0 24 1.4680860122232841E-4 0.0 0.0 2.587442873103049 0.0 25 1.4680860122232841E-4 0.0 0.0 2.659173555660279 0.0 26 1.4680860122232841E-4 0.0 0.0 2.728584662318196 0.0 27 1.4680860122232841E-4 0.0 0.0 2.8150842901583917 0.0 28 1.761703214667941E-4 0.0 0.0 2.8950362543840717 0.0 29 1.761703214667941E-4 0.0 0.0 2.9879073755173167 0.0 30 1.761703214667941E-4 0.0 0.0 3.1196534142542345 0.0 31 2.0553204171125977E-4 0.0 0.0 3.2177509215909943 0.0 32 2.0553204171125977E-4 0.0 0.0 3.3181973665473112 0.0 33 2.0553204171125977E-4 0.0 0.0 3.4181446622594724 0.0 34 2.0553204171125977E-4 0.0 0.0 3.5277813256523074 0.0 35 2.0553204171125977E-4 0.0 0.0 3.660848641800226 0.0 36 2.0553204171125977E-4 0.0 0.0 3.7650533869478346 0.0 37 2.0553204171125977E-4 0.0 0.0 3.8824415444852085 0.0 38 2.0553204171125977E-4 0.0 0.0 4.013248008174303 0.0 39 2.0553204171125977E-4 0.0 0.0 4.230319205941638 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 30695 0.0 42.925556 1 CGGTCTA 275 0.0 40.090908 31 AGGGCGA 3155 0.0 39.15214 6 GGGCGAT 6040 0.0 38.2202 7 TAGGGAC 3455 0.0 37.706223 5 GCCCTAC 2160 0.0 37.083332 26 GGCGATA 1330 0.0 36.879696 8 AGGGATC 2925 0.0 36.76923 6 ACGGGTA 245 0.0 36.734695 5 CTACGGG 555 0.0 36.486485 3 GTTTTTT 37410 0.0 36.333202 2 TAGGGCG 1265 0.0 36.284584 5 AAGGGAT 5155 0.0 36.13967 5 CCGTCGA 25 0.002107688 36.0 5 GCCAGTA 1650 0.0 35.863636 25 TACGGGA 1140 0.0 35.723686 4 AGGGATT 5975 0.0 35.698742 6 TACGGGT 240 0.0 35.625004 4 ATAGGGC 1460 0.0 35.599316 4 CTAATCC 2240 0.0 35.45759 11 >>END_MODULE