SRR1545251_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545251_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3399823
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17655	0.519291739599385	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13680	0.4023738882877138	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	9746	0.2866619821090686	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4860	0.14294861820747728	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3994	0.11747670393429306	No Hit
AGGAAGGGATAGCCTTCTGTAATTCCATTCCCCAAAATTTGACTCCCTTTT	3694	0.10865271515605371	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGT	20	7.0352375E-4	45.000004	18
CTACGGC	20	7.0352375E-4	45.000004	12
GCTTACG	40	6.8212103E-9	45.000004	1
AGGTGCG	20	7.0352375E-4	45.000004	1
CCGGATG	25	3.892424E-5	45.0	23
CGCGATA	35	1.2128658E-7	45.0	11
TAAGTCG	90	0.0	45.0	1
GTGTCGC	25	3.892424E-5	45.0	45
ACCGTAG	55	1.8189894E-12	45.0	2
GAACCGT	25	3.892424E-5	45.0	45
CGCAATA	25	3.892424E-5	45.0	41
ATACGGT	55	1.8189894E-12	45.0	29
TACCGGA	35	1.2128658E-7	45.0	22
TCACGTA	25	3.892424E-5	45.0	41
CGCTGTA	30	2.166762E-6	44.999996	16
CCGTCAC	30	2.166762E-6	44.999996	29
GCGTGCC	30	2.166762E-6	44.999996	35
ACGCGAG	335	0.0	42.985077	1
TATTACG	105	0.0	42.857143	1
GACAGCG	100	0.0	42.75	1