SRR1545250_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545250_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1440659
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6080	0.42202908530054645	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3258	0.22614650656400995	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2888	0.20046381551775955	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2346	0.16284214376892797	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTA	25	3.8912993E-5	45.0	26
CGTAGGA	20	7.0338824E-4	45.0	35
TATTCGA	20	7.0338824E-4	45.0	38
ACGTCCA	25	3.8912993E-5	45.0	12
TCATACG	25	3.8912993E-5	45.0	1
TTATTCG	20	7.0338824E-4	45.0	37
TATCGGA	25	3.8912993E-5	45.0	36
GCGTATT	20	7.0338824E-4	45.0	22
GCGATCG	30	2.165887E-6	44.999996	9
CGGTCTA	115	0.0	44.999996	31
TCGATGG	120	0.0	43.124996	2
TATAGCG	150	0.0	42.000004	1
AATACGG	70	0.0	41.785717	2
ACGGGAT	425	0.0	41.294117	5
TACGGGA	290	0.0	40.34483	4
ACGGGTA	95	0.0	40.263157	5
ACGGGAC	285	0.0	40.263157	5
TCGCCTA	45	1.9288564E-8	40.0	33
AGGGTAC	390	0.0	39.807693	6
CTCACGA	130	0.0	39.80769	24