SRR1545248_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545248_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3271258
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14000	0.42796991249238064	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7105	0.21719473058988314	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6904	0.21105030541767114	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5184	0.1584711447400358	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3936	0.12032068396928644	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATGCGT	50	2.1827873E-11	45.000004	38
TCCGATT	35	1.2128476E-7	45.0	33
GACCGAC	35	1.2128476E-7	45.0	9
CATACGT	40	6.8212103E-9	45.0	27
GCGTATT	35	1.2128476E-7	45.0	9
TCTATCG	40	6.8212103E-9	45.0	1
CGTAAGG	460	0.0	43.043476	2
ACGTAAG	80	0.0	42.1875	1
ACGGGTA	360	0.0	41.875	5
ACTACGG	135	0.0	41.666668	2
CGGTCTA	200	0.0	41.625004	31
TATACGG	220	0.0	40.909092	2
ACGTATA	50	1.0822987E-9	40.500004	13
CTACGAA	510	0.0	40.14706	11
CGTACAT	515	0.0	39.757282	35
GCTACGA	515	0.0	39.757282	10
GGTATGC	1455	0.0	39.587627	8
TGCGTAG	205	0.0	39.512196	1
GCGTAAG	245	0.0	39.489796	1
CGCATCG	80	0.0	39.375	21