SRR1545247_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545247_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1257924
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5045	0.40105761556342034	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4553	0.361945554739396	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4230	0.33626832781630683	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1406	0.11177145837109395	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1390	0.11049952143372731	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	40	6.8157533E-9	45.000004	1
TCGCAAT	20	7.03354E-4	45.000004	11
GATCGAC	25	3.8910155E-5	45.000004	9
ACGCATT	20	7.03354E-4	45.000004	43
TAGACTC	20	7.03354E-4	45.000004	34
TAAGTCG	40	6.8157533E-9	45.000004	1
ATAGACG	40	6.8157533E-9	45.000004	1
TCGATGC	20	7.03354E-4	45.000004	20
ATCGTAT	40	6.8157533E-9	45.000004	13
ATCCGAT	20	7.03354E-4	45.000004	32
ACTACGG	20	7.03354E-4	45.000004	2
TACTCTA	20	7.03354E-4	45.000004	28
GCGATCG	25	3.8910155E-5	45.000004	33
ACATGTC	25	3.8910155E-5	45.000004	19
ACGTAAG	20	7.03354E-4	45.000004	1
GTCCACA	20	7.03354E-4	45.000004	21
CCAGTAC	40	6.8157533E-9	45.000004	33
CGATCGC	25	3.8910155E-5	45.000004	34
GCATGCG	25	3.8910155E-5	45.000004	1
ATGCACG	65	0.0	45.000004	1