SRR1545246_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545246_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3070071
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18595	0.6056863180037205	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8693	0.28315306062954243	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	11035	0.0	41.28908	1
TAGGGCG	1280	0.0	39.023438	5
GACCGAT	1200	0.0	38.4375	9
TAGTACG	100	0.0	38.25	1
AGGGCGA	2580	0.0	38.110462	6
ACGGGAT	870	0.0	38.01724	5
GGACGTA	30	1.1403664E-4	37.500004	8
GGACCGA	1300	0.0	37.384617	8
CGAGGGA	1505	0.0	37.375416	4
ACGGGTA	560	0.0	37.36607	5
AACGGGA	730	0.0	37.29452	4
GGGCGAT	4725	0.0	37.285713	7
CGACCCG	955	0.0	37.225132	32
ATAGGGC	1700	0.0	37.191177	4
TATCGAG	230	0.0	37.173916	1
ACGGGAC	715	0.0	37.132866	5
CGAGGGT	540	0.0	37.083336	4
TATTGCG	170	0.0	37.058823	1
CGTTGAT	705	0.0	37.021275	25
TACGGGT	335	0.0	36.9403	4