SRR1545245_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545245_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	168748
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	741	0.4391163154526275	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	443	0.2625216298859838	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	296	0.17540948633465284	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	227	0.1345201128309669	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	179	0.10607533126318533	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCCGG	20	7.016165E-4	45.0	27
TGGGTAT	40	6.7557266E-9	45.0	6
AGGGTAC	80	0.0	45.0	6
TGCTGTA	20	7.016165E-4	45.0	26
TGATTCA	40	6.7557266E-9	45.0	44
TAGGGCG	85	0.0	45.0	5
GCGATGT	35	1.203698E-7	45.0	9
CCCCATT	80	0.0	45.0	42
TATAGCG	20	7.016165E-4	45.0	1
CGGTAGT	20	7.016165E-4	45.0	12
CCTATGC	40	6.7557266E-9	45.0	35
CGTCCCC	80	0.0	45.0	39
CGATCAA	20	7.016165E-4	45.0	10
CTAGGGA	45	3.8016879E-10	45.0	4
AATACGG	20	7.016165E-4	45.0	2
GCTTTGA	40	6.7557266E-9	45.0	40
AGCACGG	20	7.016165E-4	45.0	2
GCCTTAT	30	2.1544656E-6	44.999996	25
CATGCAT	60	0.0	44.999996	25
CCAGGGA	25	3.8766215E-5	44.999996	4