SRR1545244_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545244_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2796268
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13160	0.4706272789303458	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11860	0.4241367422578952	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7625	0.2726848785595658	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3387	0.12112572900737698	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3332	0.11915882168661944	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATAG	230	0.0	45.000004	1
GTACGAC	25	3.892244E-5	45.000004	2
TACGAAC	55	1.8189894E-12	45.0	34
GCGATAT	195	0.0	45.0	9
CCGCGAA	20	7.035024E-4	45.0	29
ACTCCGA	35	1.2127566E-7	45.0	10
TCGGTAA	45	3.8562575E-10	45.0	37
TCGCGCG	20	7.035024E-4	45.0	1
CTTACGC	35	1.2127566E-7	45.0	34
ACGGTAC	20	7.035024E-4	45.0	17
AAGTCGA	35	1.2127566E-7	45.0	16
CCGTATG	30	2.1666237E-6	44.999996	35
CGTAGCT	30	2.1666237E-6	44.999996	33
CGACGGT	210	0.0	42.857143	28
AACGAGT	80	0.0	42.1875	29
GCGACGG	240	0.0	42.187496	2
CGTTTTT	9020	0.0	41.78215	1
GTCGATG	125	0.0	41.399998	1
TAATGCG	60	3.6379788E-12	41.249996	1
CTAATCC	5060	0.0	41.17589	11