SRR1545243_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545243_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	4071561
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18361	0.450957261846255	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8204	0.20149520048944372	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7135	0.17523991412630194	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4646	0.11410856917039927	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	4632	0.11376472070540021	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4286	0.1052667514989951	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCGC	20	7.0354046E-4	45.0	14
TATATCG	20	7.0354046E-4	45.0	40
CAATTCG	50	2.1827873E-11	45.0	1
TACGATC	25	3.8925595E-5	45.0	11
ACGTCCA	20	7.0354046E-4	45.0	14
TACGTCC	25	3.8925595E-5	45.0	31
GCGTGTT	60	0.0	44.999996	44
TCACGAC	310	0.0	42.09677	25
CGGTCTA	305	0.0	42.049183	31
ATATACG	75	0.0	42.0	1
GTCGATA	70	0.0	41.785713	8
TTACGAG	140	0.0	41.785713	1
ACGTAAG	130	0.0	41.53846	1
TACGGGA	1015	0.0	40.788177	4
TAACGGG	980	0.0	40.408165	3
TATAGCG	140	0.0	40.17857	1
CTAACGG	135	0.0	40.0	2
TCATCGA	850	0.0	39.441174	16
CGGGAAC	400	0.0	39.375	6
ATCGGAT	40	3.4611185E-7	39.375	16