SRR1545242_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545242_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1345361
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5532	0.4111907510326225	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2691	0.20002066359884074	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2395	0.17801913389789062	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1347	0.10012182603776978	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAT	35	1.2121382E-7	45.000004	9
CCACGCG	20	7.033717E-4	45.0	1
GTACCGC	25	3.891163E-5	44.999996	30
CTATACG	25	3.891163E-5	44.999996	1
CTAAGCG	25	3.891163E-5	44.999996	1
TACGGAC	25	3.891163E-5	44.999996	35
CCCGTAT	25	3.891163E-5	44.999996	34
CACGACG	110	0.0	42.954544	26
AATGCGG	200	0.0	42.749996	2
AATACGG	145	0.0	41.89655	2
ACGGGCT	250	0.0	41.399998	5
GAGTACG	60	3.6379788E-12	41.249996	1
CGGGCTA	55	6.184564E-11	40.909092	6
GTCGTTT	110	0.0	40.909092	9
CGTAAGG	165	0.0	40.909092	2
ATGGGCG	435	0.0	40.86207	5
GCTACGA	105	0.0	40.714287	10
TGTACCG	50	1.0822987E-9	40.499996	1
ATAGGGC	485	0.0	40.360825	4
CGGGTAC	145	0.0	40.344826	6