SRR1545241_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545241_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2179441
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11630	0.5336230712370741	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5190	0.23813445741362121	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2772	0.12718857725444277	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2302	0.10562341444434606	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2278	0.1045222146412773	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCGA	20	7.0346793E-4	45.000004	26
GACTACG	65	0.0	44.999996	1
TGTAACG	105	0.0	40.714287	1
ACTACGG	150	0.0	39.000004	2
ACGGGTA	245	0.0	38.57143	5
ACCCGCT	980	0.0	38.57143	34
AGGGCGA	1965	0.0	38.47328	6
AAGGGCG	845	0.0	38.343193	5
CGTTTTT	8135	0.0	38.085434	1
CGTATGG	260	0.0	38.07692	2
TAACGGG	615	0.0	38.04878	3
ATAGGGC	970	0.0	38.041237	4
TACGGGC	385	0.0	37.987015	4
CGTAAGG	285	0.0	37.894737	2
CGGTAGT	440	0.0	37.840908	12
GGGCGAT	3710	0.0	37.601078	7
CGGTAAG	30	1.1402575E-4	37.500004	1
TATCGCG	60	1.5643309E-10	37.500004	1
ACGGTCT	150	0.0	37.500004	30
AGGGATC	1220	0.0	37.438526	6