SRR1545239_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545239_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	937762
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3123	0.333026930073942	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2011	0.21444673595219255	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1898	0.2023967701826263	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTACG	45	3.8380676E-10	45.000004	1
TCCGTTG	45	3.8380676E-10	45.000004	1
CCGACGG	45	3.8380676E-10	45.000004	2
CTAGACG	20	7.0326217E-4	45.0	1
AACGTAG	25	3.8902544E-5	45.0	1
CGGGTCC	25	3.8902544E-5	45.0	6
CGTATTA	20	7.0326217E-4	45.0	10
TCCGCAA	20	7.0326217E-4	45.0	32
CTCCGAA	20	7.0326217E-4	45.0	27
CACGGGT	55	1.8189894E-12	45.0	4
CGACGGT	40	6.8121153E-9	45.0	28
CTATACG	25	3.8902544E-5	45.0	1
CACGCTA	20	7.0326217E-4	45.0	17
GGTCCGC	20	7.0326217E-4	45.0	30
CCGTGCA	20	7.0326217E-4	45.0	25
CGCGAGT	20	7.0326217E-4	45.0	21
ACGGGTC	75	0.0	45.0	5
AGGTTCG	25	3.8902544E-5	45.0	1
GTCCGCA	20	7.0326217E-4	45.0	31
CGGTGCC	20	7.0326217E-4	45.0	27