SRR1545238_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545238_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3713215
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	50954	1.37223403438799	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7112	0.1915321358984061	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	6443	0.17351540376735525	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	37275	43.484913	1
AGGGCGA	2790	39.919353	6
CGGTCTA	200	39.375	31
GGGCGAT	5235	39.19771	7
GCTACGA	870	38.793102	10
CTACGAA	865	38.75723	11
GCGATCG	300	38.250004	9
AGGGATC	4980	37.95181	6
ATACTAT	5750	37.643475	45
GTTTTTT	44215	37.55513	2
GCCCTAC	5875	37.531914	26
CCCTACA	5870	37.487225	27
ACGGGAT	1795	37.479107	5
AGGGATG	8335	37.468506	6
TAGGGAT	6730	37.343983	5
AAGGGAT	7105	37.336384	5
GCCCTAG	5975	37.20502	20
CGTTGAT	1055	37.10901	25
TAAGGGA	4955	37.053482	4
TACGGGA	1290	36.976746	4