##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1545238_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3713215 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.14435011169566 31.0 31.0 33.0 30.0 34.0 2 31.454007376357147 31.0 31.0 34.0 30.0 34.0 3 31.489905917109567 31.0 31.0 34.0 30.0 34.0 4 35.30168438940379 37.0 35.0 37.0 33.0 37.0 5 35.17381891433703 37.0 35.0 37.0 32.0 37.0 6 35.168706094314494 37.0 35.0 37.0 32.0 37.0 7 35.84095696047765 37.0 35.0 37.0 35.0 37.0 8 35.92403025410594 37.0 35.0 37.0 35.0 37.0 9 37.5443756959939 39.0 37.0 39.0 35.0 39.0 10 36.74741591855037 39.0 37.0 39.0 32.0 39.0 11 36.43034809457573 39.0 35.0 39.0 32.0 39.0 12 36.18572557743088 38.0 35.0 39.0 31.0 39.0 13 36.0682958029632 38.0 35.0 39.0 31.0 39.0 14 37.012910375510174 39.0 35.0 41.0 31.0 41.0 15 37.23722461532661 39.0 35.0 41.0 32.0 41.0 16 37.00547288535676 39.0 35.0 41.0 31.0 41.0 17 37.04833681863291 39.0 35.0 41.0 31.0 41.0 18 36.97150420861706 39.0 35.0 40.0 31.0 41.0 19 36.83309988783305 38.0 35.0 40.0 31.0 41.0 20 36.66475547470319 38.0 35.0 40.0 31.0 41.0 21 36.577889510841686 38.0 35.0 40.0 31.0 41.0 22 36.500903933653184 38.0 35.0 40.0 31.0 41.0 23 36.38679392386382 38.0 35.0 40.0 30.0 41.0 24 36.17443751573771 38.0 35.0 40.0 30.0 41.0 25 36.1362547011148 38.0 35.0 40.0 30.0 41.0 26 36.04218635333532 38.0 35.0 40.0 30.0 41.0 27 35.99423572295167 38.0 35.0 40.0 30.0 41.0 28 35.93886887777842 38.0 35.0 40.0 30.0 41.0 29 35.851539164847715 38.0 34.0 40.0 30.0 41.0 30 35.704664556186486 38.0 34.0 40.0 29.0 41.0 31 35.54031775698418 38.0 34.0 40.0 28.0 41.0 32 35.25329532494079 38.0 34.0 40.0 26.0 41.0 33 34.90243791431415 38.0 34.0 40.0 24.0 41.0 34 34.56301049090882 38.0 33.0 40.0 23.0 41.0 35 34.29395739271763 38.0 33.0 40.0 22.0 41.0 36 34.11202529344517 37.0 33.0 40.0 21.0 41.0 37 33.946592912072155 37.0 33.0 40.0 20.0 41.0 38 33.93794272618203 37.0 33.0 40.0 20.0 41.0 39 33.90221061802239 37.0 33.0 40.0 20.0 41.0 40 33.79369468237094 37.0 33.0 40.0 18.0 41.0 41 33.70922071574094 37.0 33.0 40.0 18.0 41.0 42 33.614057629305066 37.0 33.0 40.0 18.0 41.0 43 33.50455333181623 37.0 32.0 40.0 18.0 41.0 44 33.429801398518535 37.0 32.0 40.0 18.0 41.0 45 33.38475795234049 37.0 32.0 40.0 18.0 41.0 46 33.29011166872912 36.0 32.0 40.0 18.0 41.0 47 33.307159967844576 36.0 32.0 40.0 18.0 41.0 48 33.23764958398584 36.0 32.0 40.0 18.0 41.0 49 33.180731791722266 36.0 32.0 40.0 18.0 41.0 50 33.038216208864824 36.0 32.0 40.0 18.0 41.0 51 32.897485063482726 36.0 31.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 6.0 13 17.0 14 36.0 15 176.0 16 491.0 17 1316.0 18 3198.0 19 5906.0 20 9831.0 21 15251.0 22 22156.0 23 31565.0 24 46019.0 25 65858.0 26 87381.0 27 96020.0 28 95483.0 29 98287.0 30 109820.0 31 128319.0 32 154249.0 33 192138.0 34 273716.0 35 352615.0 36 296147.0 37 364649.0 38 514313.0 39 747953.0 40 298.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.064158687283122 22.359976462445616 25.487212563775596 21.088652286495666 2 36.951482744737376 23.62211722186838 27.49816533650758 11.92823469688666 3 26.62135103946311 24.696738540590836 36.60332084191193 12.07858957803413 4 23.99753313503258 27.27986394539503 35.327768524041836 13.394834395530559 5 21.11897641262356 31.213921089944968 34.109632757596856 13.557469739834618 6 19.86903532383662 38.9884237783161 31.666843961365014 9.475696936482267 7 82.71748336683979 3.3823788819123046 12.308605884657904 1.5915318665900033 8 83.57840846813342 2.9028214094793863 12.15566564284589 1.363104479541314 9 78.67761495092527 5.583571110210424 13.433426289616948 2.30538764924735 10 36.666042768867406 34.070502246705345 19.459498036068474 9.803956948358767 11 25.531756173558495 23.593058845232502 35.05261612914954 15.822568852059469 12 26.84493087526577 21.788827202303125 35.88130501465711 15.48493690777399 13 20.464556994410504 29.101358256928293 34.086822335900294 16.34726241276091 14 16.452454274799603 31.085407120244856 34.87223336111698 17.58990524383856 15 15.590209562333449 26.308414675692088 41.82090183304764 16.28047392892682 16 18.527502447340108 23.318849029749153 40.020332784393034 18.133315738517698 17 18.186584940543437 23.11789109976126 35.52379811026294 23.171725849432363 18 19.20758695631683 24.764577327194896 38.00741406032239 18.020421656165883 19 22.940928548441175 26.70039305561353 32.806180089221876 17.552498306723418 20 24.849328681479527 24.5773541257374 33.68978095801078 16.883536234772293 21 21.178385846227595 26.124450105905527 34.89350872491897 17.803655322947904 22 20.237018325090254 24.17950482264022 33.69845268857311 21.88502416369642 23 17.89185382478526 27.437732530973836 34.69069256695344 19.979721077287472 24 17.969414644721624 25.100916591148103 40.23763773441613 16.692031029714144 25 18.08974163898401 28.249535779641093 35.842605397209695 17.818117184165207 26 18.408333479208718 29.93640282073621 32.849700327075055 18.805563372980018 27 16.66049501577474 29.26016942191605 34.68711076519943 19.392224797109783 28 16.792213755465276 27.075431937014148 38.04931844776023 18.083035859760344 29 17.26520010287581 24.998929499099837 37.82991289219719 19.90595750582716 30 18.392605868499402 27.806361872393598 36.287341293192014 17.513690965914982 31 21.664595236203667 27.839675321789876 33.28282903090718 17.212900411099277 32 22.699816735632062 26.722745653025747 32.34251181253981 18.234925798802383 33 22.447420900755812 28.3351489208139 30.998609022100794 18.218821156329486 34 18.902056573616125 27.481252768827012 32.28636101060671 21.33032964695015 35 19.392359451311062 27.811559524562945 33.13066978346258 19.665411240663413 36 22.563034997973457 29.082722115471366 29.810958966825247 18.543283919729937 37 19.498197653515888 31.746559248521834 31.098899471212953 17.656343626749326 38 19.232767291955895 30.269456522178217 32.02973703381032 18.468039152055564 39 19.330041486959416 31.6141672378249 30.1710243010437 18.884766974171978 40 21.876971842459973 28.114773855001662 31.45977273063908 18.548481571899284 41 18.319596360566248 28.370239805667058 31.438093404233257 21.872070429533437 42 19.213727187895127 28.804768913192476 29.811901546234193 22.169602352678204 43 19.42174099803001 28.17310605499547 31.167034497059827 21.238118449914698 44 19.36486306341001 29.145928797551445 32.12504527747518 19.36416286156336 45 18.5376553741165 32.388913650300346 29.00860844308773 20.064822532495423 46 18.962247001587574 31.63913212674192 30.281575400293274 19.11704547137723 47 18.771280413334537 30.156697094027685 31.03580051249389 20.036221980143893 48 19.484624510027025 27.77310228467783 32.69544047409051 20.04683273120463 49 18.82605774241459 28.591018834083133 32.988205638510024 19.59471778499225 50 18.369687723441817 31.457268162495307 31.37677188097107 18.79627223309181 51 17.814212212328133 30.696471925272306 31.419107161853006 20.07020870054656 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 7878.0 1 7025.5 2 6173.0 3 44838.5 4 83504.0 5 60862.5 6 38221.0 7 37731.5 8 37242.0 9 37928.0 10 38614.0 11 38798.5 12 38983.0 13 37604.5 14 36226.0 15 34674.0 16 33122.0 17 31839.0 18 30556.0 19 29296.5 20 28037.0 21 28118.5 22 28200.0 23 31399.5 24 34599.0 25 37994.0 26 49299.5 27 57210.0 28 66698.5 29 76187.0 30 88673.5 31 101160.0 32 118281.0 33 135402.0 34 152679.0 35 169956.0 36 181922.5 37 193889.0 38 207809.0 39 221729.0 40 236318.0 41 250907.0 42 263249.0 43 275591.0 44 276720.5 45 277850.0 46 263954.0 47 250058.0 48 241513.5 49 232969.0 50 216100.5 51 199232.0 52 182545.5 53 165859.0 54 150535.5 55 135212.0 56 123989.0 57 112766.0 58 105047.5 59 97329.0 60 90467.5 61 83606.0 62 73148.0 63 62690.0 64 52473.0 65 42256.0 66 35301.0 67 28346.0 68 24291.5 69 20237.0 70 17538.5 71 14840.0 72 12866.0 73 10892.0 74 9140.0 75 5442.5 76 3497.0 77 2614.0 78 1731.0 79 1359.0 80 987.0 81 685.0 82 383.0 83 299.5 84 216.0 85 132.5 86 49.0 87 34.5 88 20.0 89 13.0 90 6.0 91 5.0 92 4.0 93 5.5 94 7.0 95 7.5 96 8.0 97 4.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3713215.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.702718448622452 #Duplication Level Percentage of deduplicated Percentage of total 1 78.4584809230611 17.02762321379811 2 5.679555312265807 2.4652357971096555 3 2.3033140819326037 1.4996453105679182 4 1.4724025091681117 1.2782054839808306 5 1.1133617442404067 1.2081488233358373 6 0.8454049847986996 1.1008551816088874 7 0.6954433896633729 1.056510845797387 8 0.5527356680962429 0.9596693264963189 9 0.4825028292294314 0.9424460748087098 >10 6.303274278345368 32.89335366653428 >50 1.6944024873077161 25.665033578517267 >100 0.3947898764792691 11.374259285898624 >500 0.0029304133669594335 0.43630949389125673 >1k 0.0010192742145945389 0.30894771374908647 >5k 2.548185536486347E-4 0.3748130546736657 >10k+ 1.2740927682431736E-4 1.4089431492321625 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 50954 1.37223403438799 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7112 0.1915321358984061 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 6443 0.17351540376735525 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.6930840255681397E-5 0.0 0.0 0.014731169619857725 0.0 2 2.6930840255681397E-5 0.0 0.0 0.044974503226987934 0.0 3 2.6930840255681397E-5 0.0 0.0 0.08065786656576579 0.0 4 2.6930840255681397E-5 0.0 0.0 0.11114357773519713 0.0 5 2.6930840255681397E-5 0.0 0.0 0.20408190745755364 0.0 6 2.6930840255681397E-5 0.0 0.0 0.3662324966370113 0.0 7 2.6930840255681397E-5 0.0 0.0 0.48521294888661176 0.0 8 2.6930840255681397E-5 0.0 0.0 0.66319887213641 0.0 9 2.6930840255681397E-5 0.0 0.0 0.7804826814499026 0.0 10 2.6930840255681397E-5 0.0 0.0 0.924481884297031 0.0 11 2.6930840255681397E-5 0.0 0.0 1.041711831930012 0.0 12 5.3861680511362794E-5 0.0 0.0 1.1300719188089028 0.0 13 8.079252076704419E-5 0.0 0.0 1.1756658313617714 0.0 14 8.079252076704419E-5 0.0 0.0 1.2060976808506914 0.0 15 8.079252076704419E-5 0.0 0.0 1.232759212703816 0.0 16 8.079252076704419E-5 0.0 0.0 1.2715126918317414 0.0 17 1.3465420127840698E-4 0.0 0.0 1.323192974282394 0.0 18 1.3465420127840698E-4 0.0 0.0 1.4015347885861713 0.0 19 1.3465420127840698E-4 0.0 0.0 1.4389417257013128 0.0 20 1.6158504153408838E-4 0.0 0.0 1.4818156233883575 0.0 21 1.6158504153408838E-4 0.0 0.0 1.5317723320626466 0.0 22 1.6158504153408838E-4 0.0 0.0 1.588865713404691 0.0 23 1.8851588178976978E-4 0.0 0.0 1.6549001337116218 0.0 24 1.8851588178976978E-4 0.0 0.0 1.7089772609450302 0.0 25 1.8851588178976978E-4 0.0 0.0 1.7583953528142056 0.0 26 1.8851588178976978E-4 0.0 0.0 1.8077057213223582 0.0 27 1.8851588178976978E-4 0.0 0.0 1.862159880319346 0.0 28 2.1544672204545118E-4 0.0 0.0 1.9195225700639473 0.0 29 2.4237756230113258E-4 0.0 0.0 1.9833217306296564 0.0 30 2.4237756230113258E-4 0.0 0.0 2.0770410547194276 0.0 31 2.4237756230113258E-4 0.0 0.0 2.1484077813969833 0.0 32 2.6930840255681395E-4 0.0 0.0 2.2160311212789994 0.0 33 2.962392428124954E-4 0.0 0.0 2.2835467377999925 0.0 34 3.2317008306817675E-4 0.0 0.0 2.3578758569056735 0.0 35 3.2317008306817675E-4 0.0 0.0 2.453911233257433 0.0 36 3.501009233238582E-4 0.0 0.0 2.533545727893483 0.0 37 3.501009233238582E-4 0.0 0.0 2.6159271682356127 0.0 38 3.501009233238582E-4 0.0 0.0 2.7063609298141906 0.0 39 3.501009233238582E-4 0.0 0.0 2.8314546828018305 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 37275 0.0 43.484913 1 AGGGCGA 2790 0.0 39.919353 6 CGGTCTA 200 0.0 39.375 31 GGGCGAT 5235 0.0 39.19771 7 GCTACGA 870 0.0 38.793102 10 CTACGAA 865 0.0 38.75723 11 GCGATCG 300 0.0 38.250004 9 AGGGATC 4980 0.0 37.95181 6 ATACTAT 5750 0.0 37.643475 45 GTTTTTT 44215 0.0 37.55513 2 GCCCTAC 5875 0.0 37.531914 26 CCCTACA 5870 0.0 37.487225 27 ACGGGAT 1795 0.0 37.479107 5 AGGGATG 8335 0.0 37.468506 6 TAGGGAT 6730 0.0 37.343983 5 AAGGGAT 7105 0.0 37.336384 5 GCCCTAG 5975 0.0 37.20502 20 CGTTGAT 1055 0.0 37.10901 25 TAAGGGA 4955 0.0 37.053482 4 TACGGGA 1290 0.0 36.976746 4 >>END_MODULE