SRR1545234_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545234_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1543900
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5640	0.3653086339788847	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3527	0.22844743830558972	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3492	0.22618045210182008	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTACTC	30	2.165989E-6	45.000004	44
GCCTATA	30	2.165989E-6	45.000004	17
AATCGGT	30	2.165989E-6	45.000004	26
AAATGCG	30	2.165989E-6	45.000004	1
TATCCGC	30	2.165989E-6	45.000004	32
CTATATG	25	3.8914302E-5	45.0	1
CCGGATA	45	3.8562575E-10	45.0	20
ACGGGTA	25	3.8914302E-5	45.0	5
TCGATAG	20	7.0340396E-4	45.0	1
CGTTATT	20	7.0340396E-4	45.0	45
CTCGGTT	20	7.0340396E-4	45.0	33
ACTCGCG	20	7.0340396E-4	45.0	25
GTATCAC	20	7.0340396E-4	45.0	35
CGGCTAA	20	7.0340396E-4	45.0	38
CACGTAC	20	7.0340396E-4	45.0	42
ATACGCC	40	6.8175723E-9	45.0	2
TATACGA	20	7.0340396E-4	45.0	37
CGCCGAT	45	3.8562575E-10	45.0	38
TCGCGAT	20	7.0340396E-4	45.0	37
AATCGAC	25	3.8914302E-5	45.0	37