SRR1545232_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545232_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2209754
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8823	0.39927521344004807	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	7452	0.3372321081894184	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6018	0.2723380068550617	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5113	0.23138322184279336	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	190	0.0	45.0	25
CGGGTCC	25	3.8919792E-5	45.0	6
AACCGGT	20	7.0347026E-4	45.0	11
CAGCGCG	75	0.0	45.0	1
GTACCGT	20	7.0347026E-4	45.0	18
CCTAGCG	25	3.8919792E-5	45.0	15
TGGCGCG	25	3.8919792E-5	45.0	1
TCGATTG	35	1.2126111E-7	45.0	1
TACGGAC	20	7.0347026E-4	45.0	4
TCGATAG	25	3.8919792E-5	45.0	1
CGCCTAC	35	1.2126111E-7	45.0	30
ATATCGA	25	3.8919792E-5	45.0	12
TACGCAA	35	1.2126111E-7	45.0	30
CTACGCG	55	1.8189894E-12	45.0	1
ACGTGGT	35	1.2126111E-7	45.0	29
ACGTGCG	75	0.0	45.0	1
AACGCAC	25	3.8919792E-5	45.0	35
CGGTGCG	25	3.8919792E-5	45.0	13
ACCCGCG	20	7.0347026E-4	45.0	1
GCCAGCG	20	7.0347026E-4	45.0	1