SRR1545230_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1545230_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3101967
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12822	0.41335062558692603	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9331	0.3008091317541418	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8224	0.26512209833309	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	5629	0.1814655023731716	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTT	40	6.8212103E-9	45.000004	5
CTACCGT	40	6.8212103E-9	45.000004	30
CCAACCG	20	7.0351415E-4	45.000004	1
ATCGGAT	40	6.8212103E-9	45.000004	42
ACTCACG	20	7.0351415E-4	45.000004	44
TTCGATC	20	7.0351415E-4	45.000004	37
TATCGCC	20	7.0351415E-4	45.000004	38
GTTAGCG	45	3.8562575E-10	45.0	1
CCGTTAT	35	1.2128294E-7	45.0	14
TCGATTG	60	0.0	44.999996	1
GGGCGTA	60	0.0	44.999996	8
GTATACG	215	0.0	43.953487	1
ACGGGTA	230	0.0	43.04348	5
GTCGAAG	215	0.0	42.906975	1
TGCGTAG	310	0.0	42.82258	1
CGTTAGG	410	0.0	42.80488	2
TCGAACG	100	0.0	42.75	1
TTCGCGG	425	0.0	42.352943	2
CGGTCTA	395	0.0	42.151897	31
CGTTTTT	10140	0.0	42.093193	1